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SCNPILOT_EXPT_300_BF_Rotifera_33_5

SCNPILOT_EXPT_300_BF_unknown_33_5
In projects: SCNPILOT_EXPT_300_BF

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCNpilot_expt_300_bf_UNK

Properties

Avg. coverage: 4.61 Longest contig: 15.36 Kbp Bin length: 6.58 Mbp GC content: 32.61 %
Contigs count: 993 Features count: 7781 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 8 / 55 MC: 3 BSCG 4 / 51 MC: 1 ASCG 5 / 38 MC: 3

Description

from TS-ESOM

Displaying items 251-300 of 993 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_300_bf_scaffold_10855 6 5152 bp 32.57 3.99 61.90
SCNpilot_expt_300_bf_scaffold_2997 10 5579 bp 33.66 4.36 61.89
SCNpilot_expt_300_bf_scaffold_3964 14 7030 bp 33.74 3.64 61.88
SCNpilot_expt_300_bf_scaffold_6254
Domain: Metazoa (62.5%)
8 8585 bp 34.19 3.51 61.82
SCNpilot_expt_300_bf_scaffold_1697 8 8325 bp 32.70 8.86 61.80
SCNpilot_expt_300_bf_scaffold_1964
Domain: Metazoa (66.67%)
3 5180 bp 32.93 5.77 61.74
SCNpilot_expt_300_bf_scaffold_3975
Domain: Metazoa (50%)
14 6133 bp 33.36 4.30 61.73
SCNpilot_expt_300_bf_scaffold_1655 9 7736 bp 32.33 5.48 61.70
SCNpilot_expt_300_bf_scaffold_5136
Domain: Metazoa (60%)
10 6531 bp 33.90 4.38 61.60
SCNpilot_expt_300_bf_scaffold_1528
Domain: Metazoa (60%)
10 8564 bp 34.48 4.45 61.48
SCNpilot_expt_300_bf_scaffold_4076 11 9284 bp 33.43 4.00 61.43
SCNpilot_expt_300_bf_scaffold_6073 8 5332 bp 33.35 4.10 61.38
SCNpilot_expt_300_bf_scaffold_2120
Phylum: Mollusca (50%)
6 6774 bp 33.58 4.19 61.20
SCNpilot_expt_300_bf_scaffold_4705
Domain: Metazoa (57.14%)
7 6281 bp 32.38 4.92 61.18
SCNpilot_expt_300_bf_scaffold_2983 12 5610 bp 32.87 3.89 61.12
SCNpilot_expt_300_bf_scaffold_2069 17 12229 bp 34.33 4.31 61.11
SCNpilot_expt_300_bf_scaffold_2353
Domain: Metazoa (50%)
14 7304 bp 32.87 4.26 61.08
SCNpilot_expt_300_bf_scaffold_11009
Domain: Metazoa (50%)
8 5822 bp 30.75 3.32 61.01
SCNpilot_expt_300_bf_scaffold_2283 14 8556 bp 32.13 3.61 60.94
SCNpilot_expt_300_bf_scaffold_3183 7 5032 bp 33.92 4.54 60.93
SCNpilot_expt_300_bf_scaffold_4673 13 6500 bp 35.29 3.48 60.92
SCNpilot_expt_300_bf_scaffold_1888 5 5327 bp 36.23 6.27 60.82
SCNpilot_expt_300_bf_scaffold_20654 8 6381 bp 31.23 3.82 60.74
SCNpilot_expt_300_bf_scaffold_6503 11 5798 bp 34.51 3.38 60.64
SCNpilot_expt_300_bf_scaffold_3185 10 5359 bp 33.64 4.07 60.63
SCNpilot_expt_300_bf_scaffold_2747
Species: Philodina roseola (50%)
4 6552 bp 31.59 3.45 60.58
SCNpilot_expt_300_bf_scaffold_3488
Phylum: Chordata (50%)
4 5045 bp 32.94 3.73 60.54
SCNpilot_expt_300_bf_scaffold_4052 6 6202 bp 33.67 3.89 60.51
SCNpilot_expt_300_bf_scaffold_7848 15 8496 bp 31.77 4.52 60.38
SCNpilot_expt_300_bf_scaffold_1594
Domain: Metazoa (66.67%)
9 5953 bp 34.18 5.06 60.32
SCNpilot_expt_300_bf_scaffold_5975 8 5371 bp 31.43 3.88 60.27
SCNpilot_expt_300_bf_scaffold_3064 9 6678 bp 32.33 3.23 60.20
SCNpilot_expt_300_bf_scaffold_3709 11 7291 bp 32.90 5.71 60.16
SCNpilot_expt_300_bf_scaffold_1506
Domain: Metazoa (52.94%)
17 7870 bp 31.45 5.01 60.15
SCNpilot_expt_300_bf_scaffold_5638 6 5320 bp 31.54 3.30 60.11
SCNpilot_expt_300_bf_scaffold_3868 8 5475 bp 34.06 3.99 60.05
SCNpilot_expt_300_bf_scaffold_945 7 10489 bp 30.98 4.28 60.03
SCNpilot_expt_300_bf_scaffold_1647 13 8671 bp 33.39 4.20 60.03
SCNpilot_expt_300_bf_scaffold_1995
Species: Philodina roseola (50%)
2 5123 bp 31.25 3.82 60.02
SCNpilot_expt_300_bf_scaffold_3383 7 5924 bp 33.10 3.77 59.91
SCNpilot_expt_300_bf_scaffold_12610
Domain: Metazoa (60%)
5 5223 bp 31.27 3.36 59.79
SCNpilot_expt_300_bf_scaffold_1814 11 6912 bp 33.71 5.05 59.68
SCNpilot_expt_300_bf_scaffold_6009 13 5833 bp 31.68 4.69 59.66
SCNpilot_expt_300_bf_scaffold_2243 5 6252 bp 33.99 4.14 59.64
SCNpilot_expt_300_bf_scaffold_8308 8 5757 bp 32.99 4.58 59.61
SCNpilot_expt_300_bf_scaffold_4103 9 5195 bp 32.69 3.87 59.60
SCNpilot_expt_300_bf_scaffold_3033 15 12012 bp 32.47 4.85 59.59
SCNpilot_expt_300_bf_scaffold_1400
Domain: Metazoa (60%)
10 6587 bp 33.22 4.57 59.57
SCNpilot_expt_300_bf_scaffold_1769
Domain: Metazoa (72.73%)
11 5556 bp 35.51 4.34 59.34
SCNpilot_expt_300_bf_scaffold_3018 11 7063 bp 34.08 4.26 59.34
Displaying items 251-300 of 993 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.