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SCNpilot_expt_300_bf_scaffold_1110

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1110_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..508)
DNA (507bp) protein (169aa)
glycosyl transferase family 1 n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000287C373
glycosyl transferase family 1
Glycosyl transferase family 1 {ECO:0000313|EMBL:AIT06385.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingom
SCNpilot_expt_300_bf_scaffold_1110_2
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(595..981)
DNA (387bp) protein (129aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyan
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VCV3_SPHWW
7-cyano-7-deazaguanine reductase
SCNpilot_expt_300_bf_scaffold_1110_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1151..1987
DNA (837bp) protein (279aa)
sseA; 3-mercaptopyruvate sulfurtransferase (EC:2.8.1.2)
3-mercaptopyruvate sulfurtransferase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CB0AA
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.
SCNpilot_expt_300_bf_scaffold_1110_4
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1984..3180
DNA (1197bp) protein (399aa)
Cystathionine beta-lyase {ECO:0000313|EMBL:EZP54848.1}; EC=4.4.1.8 {ECO:0000313|EMBL:EZP54848.1};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
cystathionine beta-lyase (EC:4.4.1.8)
cystathionine beta-lyase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CB0AB rbh
SCNpilot_expt_300_bf_scaffold_1110_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3294..3704)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000367E709
Sphingomonas taxi strain 30a NODE_5, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29040.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadac
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1110_6
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3704..4210)
DNA (507bp) protein (169aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal pep
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003725DC0
peptidase A8
SCNpilot_expt_300_bf_scaffold_1110_7
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4207..5592)
DNA (1386bp) protein (462aa)
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0
isoleucyl-tRNA synthase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI0002881A8C
SCNpilot_expt_300_bf_scaffold_1110_8
RBG_19FT_COMBO_Aminicenantes_65_30_curated, Aminicenantes, Bacteria

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5929..7035
DNA (1107bp) protein (369aa)
Uncharacterized protein id=24496825 bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=Cardiobacterium valvarum genus=Cardiobacterium taxon_order=Cardiobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Uncharacterized protein Tax=RBG_19FT_COMBO_Aminicenantes_65_30_curated
SCNpilot_expt_300_bf_scaffold_1110_9
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7081..7428)
DNA (348bp) protein (116aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1219050 species="Bacteria; Proteobacte
riboflavin kinase / FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein RibF n=1 Tax=Sphingomonas sp. S17 RepID=F3WTQ9_9SPHN
SCNpilot_expt_300_bf_scaffold_1110_10
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7455..7904)
DNA (450bp) protein (150aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1219043 species="Bacteria; Proteobacte
riboflavin biosynthesis protein RibF n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC10F
riboflavin biosynthesis protein RibF
SCNpilot_expt_300_bf_scaffold_1110_11
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7949..8734)
DNA (786bp) protein (262aa)
metallophosphoesterase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B7420A rbh
DNA, contig: SP617 {ECO:0000313|EMBL:GAN13299.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucim
metallophosphoesterase
SCNpilot_expt_300_bf_scaffold_1110_12
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8808..9785
DNA (978bp) protein (326aa)
Putative acyl-CoA dehydrogenase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AYM0_AZOBR
Uncharacterized protein {ECO:0000313|EMBL:KJR64485.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum th
putative acyl-CoA dehydrogenase
SCNpilot_expt_300_bf_scaffold_1110_13
Hyphomonas johnsonii, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9782..10798
DNA (1017bp) protein (339aa)
Putative acyl-CoA dehydrogenase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AYM1_AZOBR
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KCZ92131.1}; TaxID=1280950 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas johnsonii
putative acyl-CoA dehydrogenase
SCNpilot_expt_300_bf_scaffold_1110_14
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10903..12339)
DNA (1437bp) protein (479aa)
aldehyde dehydrogenase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037C8620 rbh
DNA, contig: SP614 {ECO:0000313|EMBL:GAN13189.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucim
aldehyde dehydrogenase rbh
SCNpilot_expt_300_bf_scaffold_1110_15
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12494..13810
DNA (1317bp) protein (439aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID
adenylosuccinate lyase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002885B4F
adenylosuccinate lyase
SCNpilot_expt_300_bf_scaffold_1110_16
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14123..14890
DNA (768bp) protein (256aa)
Methyltransferase n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K7W3_9SPHN rbh
Methyltransferase {ECO:0000313|EMBL:EQB32724.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariens
methyltransferase-like protein
SCNpilot_expt_300_bf_scaffold_1110_17
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14887..15345)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000360DC62
vgr related protein
Vgr related protein {ECO:0000313|EMBL:AIT06671.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.
SCNpilot_expt_300_bf_scaffold_1110_18
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15356..15796)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC8C0
Uncharacterized protein {ECO:0000313|EMBL:KHA63200.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1110_19
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15961..17871
DNA (1911bp) protein (637aa)
molecular chaperone DnaK n=2 Tax=Sphingomonas melonis RepID=UPI00037853E1 rbh
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP
dnaK; molecular chaperone DnaK rbh
SCNpilot_expt_300_bf_scaffold_1110_20
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17935..18918
DNA (984bp) protein (328aa)
molecular chaperone DnaJ n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000364FB26
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphi
molecular chaperone DnaJ
SCNpilot_expt_300_bf_scaffold_1110_21
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18999..19373
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003648948
Uncharacterized protein {ECO:0000313|EMBL:AHE54587.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1110_22
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19751..20179)
DNA (429bp) protein (143aa)
UPI0003D693FD related cluster n=1 Tax=unknown RepID=UPI0003D693FD
Elongation factor GreAB {ECO:0000313|EMBL:ETI64571.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp.
GreA/GreB family elongation factor
SCNpilot_expt_300_bf_scaffold_1110_23
unknown

Not on your lists

comp(20462..20812)
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1110_24
unknown

Not on your lists

comp(21469..21786)
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1110_25
unknown

Not on your lists

21817..22143
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1110_26
unknown

Not on your lists

comp(22477..22626)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1110_27
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23155..23985)
DNA (831bp) protein (277aa)
Magnesium and cobalt transport protein CorA n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MQ32_9SPHN rbh
magnesium transporter
Magnesium transporter {ECO:0000313|EMBL:AIT05253.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas tax
Displaying 27 items

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