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SCNpilot_expt_300_bf_scaffold_644

Search features with annotation key words

Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_644_1
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..371)
DNA (369bp) protein (123aa)
Gram-negative bacterial tonB family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WV29_9SPHN
DNA, contig: SP611 {ECO:0000313|EMBL:GAN12550.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucim
SCNpilot_expt_300_bf_scaffold_644_2
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(823..1512)
DNA (690bp) protein (230aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000376B3B5 rbh
Putative N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:GAL99853.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" so
N-acetylmuramoyl-L-alanine amidase
SCNpilot_expt_300_bf_scaffold_644_3
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1555..2406)
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000363B5C0
CheR methyltransferase, SAM binding domain protein {ECO:0000313|EMBL:EZP57167.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomona
chemotaxis protein CheR
SCNpilot_expt_300_bf_scaffold_644_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2403..3455)
DNA (1053bp) protein (351aa)
Protein-glutamate methylesterase {ECO:0000256|SAAS:SAAS00070601}; EC=3.1.1.61 {ECO:0000256|SAAS:SAAS00070601};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
chemotaxis protein CheB n=1 Tax=Sphingomonas echinoides RepID=UPI00026CB942
chemotaxis protein CheB
SCNpilot_expt_300_bf_scaffold_644_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3469..3834)
DNA (366bp) protein (122aa)
chemotaxis protein CheY n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD127
Sphingomonas taxi strain 30a NODE_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28671.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadac
chemotaxis protein CheY
SCNpilot_expt_300_bf_scaffold_644_6
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3899..4324)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035D78C3
Chemotaxis protein CheW {ECO:0000313|EMBL:KHA65046.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
chemotaxis protein CheW
SCNpilot_expt_300_bf_scaffold_644_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4321..6600)
DNA (2280bp) protein (760aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadacea
chemotaxis protein CheA n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B7402F rbh
chemotaxis protein CheA
SCNpilot_expt_300_bf_scaffold_644_8
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6640..7284)
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035C93C0 rbh
Histidine phosphotransferase {ECO:0000313|EMBL:KHA65047.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomon
histidine phosphotransferase
SCNpilot_expt_300_bf_scaffold_644_9
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7341..7751)
DNA (411bp) protein (137aa)
peptidase M67 family protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B50815
Mov34/MPN/PAD-1 family protein {ECO:0000313|EMBL:CCW19120.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingob
putative protease
SCNpilot_expt_300_bf_scaffold_644_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7762..8643
DNA (882bp) protein (294aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomon
ribosomal large subunit pseudouridine synthase D n=1 Tax=Sphingomonas melonis RepID=UPI0003809A6A
pseudouridine synthase
SCNpilot_expt_300_bf_scaffold_644_11
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8708..9610
DNA (903bp) protein (301aa)
RNA polymerase sigma 70 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5E1DB rbh
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacter
RNA polymerase sigma 70
SCNpilot_expt_300_bf_scaffold_644_12
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9667..10344
DNA (678bp) protein (226aa)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|SAAS:SAAS00055690}; EC=2.4.-.- {ECO:0000256|SAAS:SAAS00279069};; EC=2.4.2.- {ECO:0000256|SAAS:SAAS00055699};; TaxID=1470591 spec
Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Sphingomonas sp. S17 RepID=F3WV52_9SPHN rbh
peptidoglycan transglycosylase
SCNpilot_expt_300_bf_scaffold_644_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10442..10990
DNA (549bp) protein (183aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILA1_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65164.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingo
SCNpilot_expt_300_bf_scaffold_644_14
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11047..11370)
DNA (324bp) protein (108aa)
DNA-binding protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003614680
Nucleoid-associated protein NX02_04975 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" sou
nucleoid-associated protein
SCNpilot_expt_300_bf_scaffold_644_15
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11367..12995)
DNA (1629bp) protein (543aa)
DNA polymerase III subunit gamma/tau n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B676BA rbh
Sphingomonas taxi strain 30a NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29676.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
DNA polymerase III subunit gamma/tau rbh
SCNpilot_expt_300_bf_scaffold_644_16
unknown

Not on your lists

comp(13391..13642)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_644_17
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13687..14022)
DNA (336bp) protein (112aa)
2Fe-2S ferredoxin n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B49C69
ferredoxin
Ferredoxin {ECO:0000313|EMBL:ABQ66426.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (stra
SCNpilot_expt_300_bf_scaffold_644_18
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14019..15089)
DNA (1071bp) protein (357aa)
aminotransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B64288 rbh
IscS protein {ECO:0000313|EMBL:GAN12535.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis
aminotransferase
SCNpilot_expt_300_bf_scaffold_644_19
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15307..16080)
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037CF918
Sphingomonas taxi strain 30a NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29688.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
aminotransferase
SCNpilot_expt_300_bf_scaffold_644_20
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16179..16835
DNA (657bp) protein (219aa)
alpha/beta hydrolase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B37431 rbh
DNA, contig: SP611 {ECO:0000313|EMBL:GAN12537.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucim
alpha/beta hydrolase
SCNpilot_expt_300_bf_scaffold_644_21
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16863..17051)
DNA (189bp) protein (63aa)
membrane protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4BED8
Membrane protein {ECO:0000313|EMBL:KHA63553.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20
hypothetical protein
SCNpilot_expt_300_bf_scaffold_644_22
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17048..17995)
DNA (948bp) protein (316aa)
acetyl-CoA carboxylase subunit alpha n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B57CD4 rbh
acetyl-CoA carboxylase subunit alpha rbh
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=
SCNpilot_expt_300_bf_scaffold_644_23
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18005..18622)
DNA (618bp) protein (206aa)
tyrosine recombinase XerD n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB152
Recombinase XerD {ECO:0000313|EMBL:KHA64757.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20
recombinase XerD
SCNpilot_expt_300_bf_scaffold_644_24
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18564..18869)
DNA (306bp) protein (102aa)
tyrosine recombinase XerD n=1 Tax=Sphingomonas melonis RepID=UPI00036DEA68
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingom
recombinase XerD
SCNpilot_expt_300_bf_scaffold_644_25
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18874..20655)
DNA (1782bp) protein (594aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000364B0FE rbh
Uncharacterized protein {ECO:0000313|EMBL:EZP56750.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
hypothetical protein
SCNpilot_expt_300_bf_scaffold_644_26
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20636..20773)
DNA (138bp) protein (46aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WSN3_9SPHN
DNA, contig: SP614 {ECO:0000313|EMBL:GAN13073.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucim
SCNpilot_expt_300_bf_scaffold_644_27
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20816..21397
DNA (582bp) protein (194aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1219049 species="Bacteria; Proteobacteria; Alphap
shikimate kinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5DE5D
shikimate kinase
SCNpilot_expt_300_bf_scaffold_644_28
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21394..22488
DNA (1095bp) protein (365aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=104605 species="Bacteria
3-dehydroquinate synthase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3E4C1 rbh
3-dehydroquinate synthase
SCNpilot_expt_300_bf_scaffold_644_29
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22490..22822)
DNA (333bp) protein (111aa)
membrane protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4D6FD
membrane protein
Membrane protein {ECO:0000313|EMBL:AIT05328.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_300_bf_scaffold_644_30
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22819..24861)
DNA (2043bp) protein (681aa)
sodium/hydrogen exchanger n=1 Tax=Sphingomonas melonis RepID=UPI00037502CE rbh
Sphingomonas taxi strain 30a NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29479.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadac
sodium:proton exchanger
Displaying items 1-30 of 66 in total

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