ggKbase home page

SCNpilot_expt_300_bf_scaffold_773

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_773_1
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..927
DNA (927bp) protein (309aa)
cysteine desulfarase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003769C9D
FeS assembly protein SufB {ECO:0000313|EMBL:EZP52618.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas
cysteine desulfurase
SCNpilot_expt_300_bf_scaffold_773_2
Sphingomonas melonis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

924..1202
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000361661F
SCNpilot_expt_300_bf_scaffold_773_3
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1199..1969
DNA (771bp) protein (257aa)
FeS assembly ATPase SufC n=1 Tax=Sphingomonas sp. S17 RepID=F3WWI0_9SPHN rbh
SufC protein {ECO:0000313|EMBL:GAN15209.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis
sufC; cysteine desulfurase rbh
SCNpilot_expt_300_bf_scaffold_773_4
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1969..3042
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000374F284 rbh
FeS assembly protein SufD {ECO:0000313|EMBL:GAM00658.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas
SufBD protein
SCNpilot_expt_300_bf_scaffold_773_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3039..4250
DNA (1212bp) protein (404aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=1549858 species="Bacteria; Proteo
cysteine desulfurase n=1 Tax=Sphingomonas melonis RepID=UPI0003790929
cysteine desulfurase
SCNpilot_expt_300_bf_scaffold_773_6
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4476..4679
DNA (204bp) protein (68aa)
FeS assembly SUF system protein n=1 Tax=Alphaproteobacteria RepID=UPI000262B5A2
FeS assembly SUF system protein {ECO:0000313|EMBL:KEZ18904.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobi
putative metal-sulfur cluster biosynthetic enzyme
SCNpilot_expt_300_bf_scaffold_773_7
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4679..5035
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036DCEC9
Putative iron-sulfur cluster assembly protein {ECO:0000313|EMBL:GAO40340.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;"
HesB/YadR/YfhF
SCNpilot_expt_300_bf_scaffold_773_8
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5066..6700
DNA (1635bp) protein (545aa)
phosphoglucomutase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B2EFCC rbh
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I family protein {ECO:0000313|EMBL:EZP48850.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; S
pgm; phosphoglucomutase
SCNpilot_expt_300_bf_scaffold_773_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6693..8180)
DNA (1488bp) protein (496aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:
glycerol kinase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037BDADC rbh
glycerol kinase
SCNpilot_expt_300_bf_scaffold_773_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8257..9756
DNA (1500bp) protein (500aa)
glycerol-3-phosphate dehydrogenase (EC:1.1.5.3) rbh
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217, ECO:0000313|EMBL:AJP73851.1}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217, ECO:0000313|EMBL:AJP73851.1};; TaxID=1609977 species="Bacter
glycerol-3-phosphate dehydrogenase n=1 Tax=Sphingomonas elodea RepID=UPI0002631E77 rbh
SCNpilot_expt_300_bf_scaffold_773_11
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9767..10912
DNA (1146bp) protein (382aa)
aspB; aspartate aminotransferase (EC:2.6.1.1) Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
aspartate transaminase (EC:2.6.1.1)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI000312D36C rbh
SCNpilot_expt_300_bf_scaffold_773_12
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10925..11725)
DNA (801bp) protein (267aa)
UspA n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MM81_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE53587.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
UspA domain-containing protein
SCNpilot_expt_300_bf_scaffold_773_13
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12290..13504)
DNA (1215bp) protein (405aa)
Transcriptional regulator, TetR family n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0AL98_MARMM
Uncharacterized protein {ECO:0000313|EMBL:AHE55494.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
TetR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_773_14
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13723..14598
DNA (876bp) protein (292aa)
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDB94
Putative oxidoreductase {ECO:0000313|EMBL:GAO40328.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas c
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_300_bf_scaffold_773_15
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16419..17168
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI0003757BA9
TonB-dependent receptor Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
TonB-dependent receptor
SCNpilot_expt_300_bf_scaffold_773_16
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17191..18711
DNA (1521bp) protein (507aa)
sodium:melibiose symporter n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI00028863FC
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
Na+/melibiose symporter-like protein
SCNpilot_expt_300_bf_scaffold_773_17
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19097..20521
DNA (1425bp) protein (475aa)
Putative monooxygenase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCQ6_PHEZH rbh
monooxygenase
Putative monooxygenase {ECO:0000313|EMBL:ACG78243.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacteri
SCNpilot_expt_300_bf_scaffold_773_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21026..21760
DNA (735bp) protein (245aa)
Outer membrane receptor protein n=1 Tax=Caulobacter sp. AP07 RepID=J2PZK8_9CAUL
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AIT05238.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas t
SCNpilot_expt_300_bf_scaffold_773_19
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21820..22419
DNA (600bp) protein (200aa)
TonB-dependent receptor plug n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SY57_CAUSK
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AIT05238.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas t
Displaying 19 items

View Taxonomy