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SCNpilot_expt_300_bf_scaffold_691_9

Organism: SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9

near complete RP 51 / 55 MC: 1 BSCG 50 / 51 MC: 3 ASCG 11 / 38 MC: 1
Location: comp(4616..5428)

Top 3 Functional Annotations

Value Algorithm Source
shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25] Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 75.9
  • Coverage: 266.0
  • Bit_score: 413
  • Evalue 1.80e-112
Shikimate dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WG67_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 74.6
  • Coverage: 268.0
  • Bit_score: 405
  • Evalue 4.60e-110
  • rbh
shikimate 5-dehydrogenase similarity KEGG
DB: KEGG
  • Identity: 72.6
  • Coverage: 266.0
  • Bit_score: 393
  • Evalue 5.10e-107

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Taxonomy

R_Sphingopyxis_65_24 → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 813
GTGACCCGTCCCTATGCCGAGGTGATCGGCGACCCGATCGCCCATTCGAAATCGCCGCTGATCCACGGCTTCTGGCTGGAGAAATTGGGGATTGAGGCGGATTATCGCGCGACCCGCGTCACCCCCGACGACCTGCCGCGCTACATCGCCGGGCGGCGTGACGATCCGACGTGGCACGGCTGCAACGTGACGATCCCGCACAAGATCGCGATGCTCGATCTGGTCGACGATCCGGGCGAGGTGCGCGATTCGATCGGCGCGATGAACACGATCGTGCGCGATTCGGACGGGCGGGTGTTCGGCACCAATACCGACGCCGCCGGCTTCTATGCGCCGCTCGCCGAGGTGGACCTCGCCGGCGCGCCGGTGGCGGTGATCGGCGCGGGCGGCGCGGCGCGCGCGGTGCTGTTCGCGCTGGCGCGGGCGGGGGTCGGCCCGGTCACGATCCTCAACCGCAGCCCGCTGAAAGGCGCGGCGCTGCTCGCGCGCTTCGGGCTGAAGGGCGATGCGCTGCCGCTGTCCGCCACGCTCCCGCCCGCTGCCTTGCTGGTCAACACCAGCGCGCTCGGCATGACGGGCCAGCCGCCGCTGGAGCTGGACCTGTCGCCGCTGCCGGAGGGGGCGATCGTCTATGATATCGTCTATGCCCCGCTGGAGACCGGCCTGCTGCGCCAGGCTGAGGCACGCGGGCTGGAGACGATCGACGGGCTGGAGATGCTGATCGGGCAGGCGGCGATGGCGTTCGAACTGTTCTTCGGCCGCCCCGCCCCGCGCGTCCATGACGCCGAGCTGCGCGAGCTGCTGACGCGATGA
PROTEIN sequence
Length: 271
VTRPYAEVIGDPIAHSKSPLIHGFWLEKLGIEADYRATRVTPDDLPRYIAGRRDDPTWHGCNVTIPHKIAMLDLVDDPGEVRDSIGAMNTIVRDSDGRVFGTNTDAAGFYAPLAEVDLAGAPVAVIGAGGAARAVLFALARAGVGPVTILNRSPLKGAALLARFGLKGDALPLSATLPPAALLVNTSALGMTGQPPLELDLSPLPEGAIVYDIVYAPLETGLLRQAEARGLETIDGLEMLIGQAAMAFELFFGRPAPRVHDAELRELLTR*