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SCNpilot_expt_300_bf_scaffold_691

Search features with annotation key words

Displaying items 1-30 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_691_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(95..589)
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037AD3B4
Sphingomonas taxi strain 30a NODE_14, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26409.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
transcription elongation factor
SCNpilot_expt_300_bf_scaffold_691_2
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(627..1268)
DNA (642bp) protein (214aa)
cell wall hydrolase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD046
Cell wall hydrolase, SleB {ECO:0000313|EMBL:EAT08994.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas
cell wall hydrolase SleB
SCNpilot_expt_300_bf_scaffold_691_3
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1430..1759)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4FC82
Uncharacterized protein {ECO:0000313|EMBL:KHA64977.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
hypothetical protein
SCNpilot_expt_300_bf_scaffold_691_4
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1756..2211)
DNA (456bp) protein (152aa)
Uncharacterized 1 domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WY79_9SPHN
Thioesterase {ECO:0000313|EMBL:KHA65004.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
thioesterase
SCNpilot_expt_300_bf_scaffold_691_5
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2198..2668)
DNA (471bp) protein (157aa)
nitrogen regulatory protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3C176
PTS IIA-like nitrogen-regulatory protein PtsN {ECO:0000313|EMBL:GAM01008.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;"
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN
SCNpilot_expt_300_bf_scaffold_691_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2686..3270)
DNA (585bp) protein (195aa)
Ribosomal subunit interface protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WY81_9SPHN rbh
Sphingomonas taxi strain 30a NODE_14, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26443.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
30S ribosomal protein S30
SCNpilot_expt_300_bf_scaffold_691_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3326..4018)
DNA (693bp) protein (231aa)
DNA polymerase III, epsilon subunit n=1 Tax=Sphingomonas sp. S17 RepID=F3WY82_9SPHN rbh
DNA polymerase III subunit epsilon rbh
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:AIT07387.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sph
SCNpilot_expt_300_bf_scaffold_691_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4026..4619)
DNA (594bp) protein (198aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1549858 species="Bacteria; P
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000360036C
dephospho-CoA kinase
SCNpilot_expt_300_bf_scaffold_691_9
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4616..5428)
DNA (813bp) protein (271aa)
shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25] Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
Shikimate dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WG67_9SPHN rbh
shikimate 5-dehydrogenase
SCNpilot_expt_300_bf_scaffold_691_10
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5425..6015)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003773785 rbh
Maf-like protein SP5_043_00400 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sph
septum formation protein Maf
SCNpilot_expt_300_bf_scaffold_691_11
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6012..6842)
DNA (831bp) protein (277aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00
PEP synthetase regulatory protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003725BDE
phosphate kinase
SCNpilot_expt_300_bf_scaffold_691_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7147..8163
DNA (1017bp) protein (339aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.
uroporphyrinogen decarboxylase n=1 Tax=Sphingomonas melonis RepID=UPI00037BFDB7 rbh
uroporphyrinogen decarboxylase rbh
SCNpilot_expt_300_bf_scaffold_691_13
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8188..8646
DNA (459bp) protein (153aa)
membrane protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B58E72
Uncharacterized protein {ECO:0000313|EMBL:GAM01000.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas p
membrane protein
SCNpilot_expt_300_bf_scaffold_691_14
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8810..10066
DNA (1257bp) protein (419aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=392499 specie
transcription termination factor Rho n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5DCF5 rbh
rho; transcription termination factor Rho
SCNpilot_expt_300_bf_scaffold_691_15
unknown

Not on your lists

comp(10060..10827)
DNA (768bp) protein (256aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_691_16
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11006..11614
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003689EA9 rbh
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" s
cell envelope biogenesis protein LolA
SCNpilot_expt_300_bf_scaffold_691_17
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11795..12844)
DNA (1050bp) protein (350aa)
GTP cyclohydrolase II {ECO:0000256|SAAS:SAAS00129532}; EC=3.5.4.25 {ECO:0000256|SAAS:SAAS00129532};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomona
GTP cyclohydrolase II n=1 Tax=Sphingomonas sp. S17 RepID=F3X097_9SPHN rbh
GTP cyclohydrolase
SCNpilot_expt_300_bf_scaffold_691_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12841..13623)
DNA (783bp) protein (261aa)
exodeoxyribonuclease III n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B484D6 rbh
exodeoxyribonuclease III
Exodeoxyribonuclease III {ECO:0000313|EMBL:AIT07379.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas
SCNpilot_expt_300_bf_scaffold_691_19
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13663..14325)
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000368683B rbh
haloacid dehalogenase
Haloacid dehalogenase {ECO:0000313|EMBL:AIT07409.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas tax
SCNpilot_expt_300_bf_scaffold_691_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14322..14996)
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037C3419 rbh
alanine racemase
Alanine racemase {ECO:0000313|EMBL:AJP73616.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC
SCNpilot_expt_300_bf_scaffold_691_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15019..15528
DNA (510bp) protein (170aa)
thiamine monophosphate synthase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3DB39
thiamine monophosphate synthase
Thiamine monophosphate synthase {ECO:0000313|EMBL:AJP73615.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphing
SCNpilot_expt_300_bf_scaffold_691_22
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15544..16242)
DNA (699bp) protein (233aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X0A1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHA65009.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
hypothetical protein
SCNpilot_expt_300_bf_scaffold_691_23
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16478..16912
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B63012
Uncharacterized protein {ECO:0000313|EMBL:KHA65008.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
hypothetical protein
SCNpilot_expt_300_bf_scaffold_691_24
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


16955..19243
DNA (2289bp) protein (763aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1549858 species="Bacteria; Proteo
leucyl-tRNA synthetase n=1 Tax=Sphingomonas melonis RepID=UPI0003611194
leucyl-tRNA synthetase
SCNpilot_expt_300_bf_scaffold_691_25
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19182..19427
DNA (246bp) protein (82aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=104605 species="Bacteria; Proteob
leucyl-tRNA synthetase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CC5F1
Suspect SCG annotation. See neighboring gene [SCNpilot_expt_300_bf_scaffold_691_24].
leucyl-tRNA synthetase
SCNpilot_expt_300_bf_scaffold_691_26
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19424..19927
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9C20
Uncharacterized protein {ECO:0000313|EMBL:EZP49214.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
secreted (periplasmic)-like protein
SCNpilot_expt_300_bf_scaffold_691_27
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19924..20946
DNA (1023bp) protein (341aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000363CB9A rbh
DNA polymerase III subunit delta
DNA polymerase III subunit delta {ECO:0000313|EMBL:AIT07402.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphin
SCNpilot_expt_300_bf_scaffold_691_28
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20951..21838)
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000377B99D rbh
Chromosome partitioning protein ParB {ECO:0000313|EMBL:KHA64990.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sp
chromosome partitioning protein ParB rbh
SCNpilot_expt_300_bf_scaffold_691_29
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21835..22617)
DNA (783bp) protein (261aa)
chromosome partitioning protein ParA n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B77F40 rbh
Sphingomonas taxi strain 30a NODE_14, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26425.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
chromosome partitioning protein ParA rbh
SCNpilot_expt_300_bf_scaffold_691_30
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22614..23228)
DNA (615bp) protein (205aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltran
16S rRNA methyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI000263160E
gidB; putative S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division
Displaying items 1-30 of 82 in total

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