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SCNpilot_expt_300_bf_scaffold_654_17

Organism: SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9

near complete RP 51 / 55 MC: 1 BSCG 50 / 51 MC: 3 ASCG 11 / 38 MC: 1
Location: 21101..21772

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EWC6_SPHCR similarity UNIREF
DB: UNIREF100
  • Identity: 52.8
  • Coverage: 193.0
  • Bit_score: 200
  • Evalue 1.90e-48
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 52.8
  • Coverage: 193.0
  • Bit_score: 200
  • Evalue 5.30e-49
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEG49820.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.8
  • Coverage: 193.0
  • Bit_score: 200
  • Evalue 2.60e-48

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Taxonomy

Sphingobium chlorophenolicum → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 672
ATGGCGGCTTTCATACGCGCGGGGGAAAGGACGGGCGGCATTGCCCGCCTGCGATATCGAAAAGGGGGGAGCGCGGCGCTGCTCGATCGGGACGACAGGCTGCATTGGTTCAAGACCGTCATTCTGCCGTTCCAGCCGGTGCTCCGGCGGCGGTTGAGGCGGCTGGTGCGCGATGCCGACGATCTCGACGATCTGGTCGCCGAGGTGCTGGCGCGCACCTATGCCTATGACGGATGGCGGGACATCCGCCACGGGCTCGCGTTCATGACGCGCGCGGCGCACAACATCCTGATCGACCAGCAGCGGCGCGAGGTGATCGTCTCGATCGACTATGTCGCCGATCTGGAAGTGCTCCAGCGCAGCATATCCTATGACGAGATGTTCGATGCGCGCGACGCGCTGCGGCATCTCGAAAGCGTCGTCGAAACGCTCTCCCCGCAACCGCGCAGGGCCTTCCTGTTGCGGCGGGTGCAGGGCCATTCGGTCGGCGAGGTGGCGGAGATCATGGGGATATCCGTCTCAACGGTGGAGAAGCATCTGGCGAAAGCCCTGGCGCGCGTGGCGCGCGCGCGGGCCGAGCAGGAGGATCAAGGCGTTGTCCAGCGGCGCGGCGAAGGCGAACGGGCGGAAGGCGATCCGCGACGAGGCGGCGACATGGGTCGTTCGCCTTGA
PROTEIN sequence
Length: 224
MAAFIRAGERTGGIARLRYRKGGSAALLDRDDRLHWFKTVILPFQPVLRRRLRRLVRDADDLDDLVAEVLARTYAYDGWRDIRHGLAFMTRAAHNILIDQQRREVIVSIDYVADLEVLQRSISYDEMFDARDALRHLESVVETLSPQPRRAFLLRRVQGHSVGEVAEIMGISVSTVEKHLAKALARVARARAEQEDQGVVQRRGEGERAEGDPRRGGDMGRSP*