ggKbase home page

SCNpilot_expt_300_bf_scaffold_654

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_654_1
Pandoraea sputorum, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1253
DNA (1251bp) protein (417aa)
phthalate 4,5-dioxygenase, partial n=1 Tax=Sphingomonas wittichii RepID=UPI000363E7DA
phthalate 4,5-dioxygenase
Phthalate 4,5-dioxygenase {ECO:0000313|EMBL:AJC17890.1}; TaxID=93222 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sputorum.;
SCNpilot_expt_300_bf_scaffold_654_2
Mycobacterium sp. KMS, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1284..2249
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00035FBFB2
fumarylacetoacetate (FAA) hydrolase
Fumarylacetoacetate (FAA) hydrolase {ECO:0000313|EMBL:ABL91845.1}; TaxID=189918 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium sp. (stra
SCNpilot_expt_300_bf_scaffold_654_3
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2284..3306
DNA (1023bp) protein (341aa)
2,2',3-trihydroxy-3'-methoxy-5,5'-dicarboxybiphenyl dioxygenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMZ9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHS00094.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_654_4
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3252..4058)
DNA (807bp) protein (269aa)
Uncharacterized protein; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
SCNpilot_expt_300_bf_scaffold_654_5
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4547..4873
DNA (327bp) protein (109aa)
Putative monooxygenase, FAD-binding protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJD7_9BURK
Putative monooxygenase, FAD-binding protein {ECO:0000313|EMBL:EIK89327.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source
cadA; FAD-monooxygenase
SCNpilot_expt_300_bf_scaffold_654_6
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4870..5841
DNA (972bp) protein (324aa)
putative FAA hydrolase (EC:3.7.1.2)
Putative FAA hydrolase {ECO:0000313|EMBL:BAI98723.1}; EC=3.7.1.2 {ECO:0000313|EMBL:BAI98723.1};; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadacea
Putative FAA hydrolase n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z8A4_SPHJU
SCNpilot_expt_300_bf_scaffold_654_7
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5890..6381
DNA (492bp) protein (164aa)
Transcriptional regulator, MarR family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VED1_SPHWW
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABQ70647.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="
SCNpilot_expt_300_bf_scaffold_654_8
Pandoraea oxalativorans, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6571..7911
DNA (1341bp) protein (447aa)
Major facilitator superfamily MFS_1 n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5WJK8_BURSC
MFS transporter rbh
MFS transporter {ECO:0000313|EMBL:AKC72231.1}; TaxID=573737 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea oxalativorans.;"
SCNpilot_expt_300_bf_scaffold_654_9
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7981..9660)
DNA (1680bp) protein (560aa)
Thiamine pyrophosphate enzyme TPP binding domain protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VEC4_SPHWW rbh
hypothetical protein
Thiamine pyrophosphate enzyme TPP binding domain protein {ECO:0000313|EMBL:ABQ70640.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphing
SCNpilot_expt_300_bf_scaffold_654_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9970..11715
DNA (1746bp) protein (582aa)
ATP-dependent RNA helicase DeaD {ECO:0000313|EMBL:AKH42641.1}; EC=3.6.4.13 {ECO:0000313|EMBL:AKH42641.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Eryth
Putative helicase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y5X2_9SPHN rbh
DEAD/DEAH box helicase
SCNpilot_expt_300_bf_scaffold_654_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11796..13418
DNA (1623bp) protein (541aa)
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZB5_ALIDB
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:ADV00936.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" s
SCNpilot_expt_300_bf_scaffold_654_12
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13445..15235)
DNA (1791bp) protein (597aa)
Amidohydrolase, imidazolonepropionase n=1 Tax=Sphingobium sp. AP49 RepID=J2CV27_9SPHN
Amidohydrolase, imidazolonepropionase {ECO:0000313|EMBL:EJK80994.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphin
amidohydrolase
SCNpilot_expt_300_bf_scaffold_654_13
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15232..17700)
DNA (2469bp) protein (823aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CX24_SPHYA rbh
Uncharacterized protein {ECO:0000313|EMBL:EKU76814.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yano
hypothetical protein
SCNpilot_expt_300_bf_scaffold_654_14
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17700..19109)
DNA (1410bp) protein (470aa)
Outer membrane cobalamin receptor protein n=1 Tax=Sphingobium sp. AP49 RepID=J2L0W1_9SPHN
Outer membrane cobalamin receptor protein {ECO:0000313|EMBL:EJK80996.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; S
TonB-dependent receptor
SCNpilot_expt_300_bf_scaffold_654_15
unknown

Not on your lists

19697..20029
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_654_16
unknown

Not on your lists

comp(20013..21044)
DNA (1032bp) protein (344aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_654_17
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21101..21772
DNA (672bp) protein (224aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EWC6_SPHCR
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEG49820.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;"
Displaying 17 items

View Taxonomy