ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

SCNpilot_expt_300_bf_scaffold_1074_4

Organism: SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9

near complete RP 51 / 55 MC: 1 BSCG 50 / 51 MC: 3 ASCG 11 / 38 MC: 1
Location: comp(2504..3958)

Top 3 Functional Annotations

Value Algorithm Source
Type I restriction-modification system, R subunit {ECO:0000313|EMBL:EDY87331.1}; EC=3.1.21.3 {ECO:0000313|EMBL:EDY87331.1};; TaxID=391615 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" sour similarity UNIPROT
DB: UniProtKB
  • Identity: 71.3
  • Coverage: 436.0
  • Bit_score: 646
  • Evalue 3.90e-182
Type I restriction-modification system, R subunit n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JT78_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 71.3
  • Coverage: 436.0
  • Bit_score: 646
  • Evalue 2.80e-182
restriction endonuclease similarity KEGG
DB: KEGG
  • Identity: 67.5
  • Coverage: 456.0
  • Bit_score: 629
  • Evalue 5.80e-178

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

gamma proteobacterium HTCC5015 → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1455
ATGTCGGAATTCCCGAGCCCTGCCGAGCTTTGGCGCAAGTTTCAGGTTTGGAAGGGACTCGACGAACCTGCGTCGCAAATCGTCGAGCAGGGATACTATGCCGCTCCAGATGGAAAGGCTCCGCGCTACTACCAGGCGACGGCGGTTAACCGCGCTGTCGCTGCCGTAGCAAACGGTCAAGATCGCATTCTGCTGGTAATGGCAACCGGCACTGGCAAAACTTATACTGCTTTTCAGATTATCTGGCGGCTGTGGAAAGCCCGAGCAAAAAAGCGCATCCTTTTCCTGGCAGATCGCAACATTCTTGTCGATCAAACCAAGAGTAACGATTTCGCGCCGTTTGGCGGAGCGATGACAAAAATCGCGAACCGCCAAGTTGATAAGTCATACGAGATTTACCTTGCGCTCTACCAAGCGGTGTCCGGCACGACAGACGAGCAGGATATATACAAGCAGTTTTCGCCTGATTTCTTTGACCTGATTATTGTCGACGAATGTCACCGGGGAAGCGCGGCGGCAGACTCTGCTTGGCGCGATATTCTGGCATACTACAGCAGCGCTACACAAATCGGAATGACGGCGACACCCAAGGAGACGGCTGAGGTTTCTAGCACCGACTACTTTGGCGAGCCGCTATACACATATTCGCTAAGGCAGGGCATCGAGGACGGTTTTCTCGCTCCGTACAAAGTTATTCGATACGATTTAGATCTCGATCTAATCGGATATCGGCCGCATGTCGGTGACGTTGACCGCTACGGTCACGCCGTTGAAGATCGCATTTACGGGCAAAGCGATGTTGACACGAAGGTGGTTTTTGACCCGCGCACCAAACTCGTCGCCGCGAAGGTGACGGAGTTTCTCAAGGGAAATGATCGCTTCGGAAAGACAATCGTGTTTTGCGAAGACACCGAGCATGCAGATCGCATGCGTAAGGAACTAGCCAACGCAAACGCCGACCTTGTTGCCGATAATTACCGATACGTGGTTCGCATGACCGGCGACGACGCGGCGGGTGCCGCGGAATTAGATAATTTCATTGATCCCTTCTCATCCCACCCCGTCATTGCAACCACATCGAAGCTTCTTACGACGGGAGTGGACGTAAAAACCTGTAAGCTGATCGTTCTCGATCAGCGCATCCAGTCGATGACGGAGTTCAAGCAGATAATTGGTCGTGGCACGCGCATTGATGAGGCGAACGGCAAGCGCTTCTTCACGATCATGGATTTCAAGCGGGCCACCGAGCTTTTCGCTGATCCGGCCTTCGATGGAGATCCCGTCCAGATCTTCGAACCTCCACTCGGAGCAGACCTCGAAGAGCTGAGAGCACCATTGAAAGTGATCAGGTTGCAGCATCGGCGGATGAGCAACTCACAGATAGCTCCAGACCAAGAAAATACTACATCGACGGCGTCGAGGTGGAGGTCGCAGCGCGCCGCGTTCAATATCTAG
PROTEIN sequence
Length: 485
MSEFPSPAELWRKFQVWKGLDEPASQIVEQGYYAAPDGKAPRYYQATAVNRAVAAVANGQDRILLVMATGTGKTYTAFQIIWRLWKARAKKRILFLADRNILVDQTKSNDFAPFGGAMTKIANRQVDKSYEIYLALYQAVSGTTDEQDIYKQFSPDFFDLIIVDECHRGSAAADSAWRDILAYYSSATQIGMTATPKETAEVSSTDYFGEPLYTYSLRQGIEDGFLAPYKVIRYDLDLDLIGYRPHVGDVDRYGHAVEDRIYGQSDVDTKVVFDPRTKLVAAKVTEFLKGNDRFGKTIVFCEDTEHADRMRKELANANADLVADNYRYVVRMTGDDAAGAAELDNFIDPFSSHPVIATTSKLLTTGVDVKTCKLIVLDQRIQSMTEFKQIIGRGTRIDEANGKRFFTIMDFKRATELFADPAFDGDPVQIFEPPLGADLEELRAPLKVIRLQHRRMSNSQIAPDQENTTSTASRWRSQRAAFNI*