ggKbase home page

SCNpilot_expt_300_bf_scaffold_5283_10

Organism: SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9

near complete RP 51 / 55 MC: 1 BSCG 50 / 51 MC: 3 ASCG 11 / 38 MC: 1
Location: 5185..5703

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPW8_SPHAL similarity UNIREF
DB: UNIREF100
  • Identity: 61.8
  • Coverage: 165.0
  • Bit_score: 205
  • Evalue 4.50e-50
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 61.8
  • Coverage: 165.0
  • Bit_score: 205
  • Evalue 1.30e-50
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABF54304.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 61.8
  • Coverage: 165.0
  • Bit_score: 205
  • Evalue 6.30e-50

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Sphingopyxis alaskensis → Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 519
GTGACGGAGGAGGTCGACTTGCCAGCAGTGCTGACGCTCGAACAGGTATTTCGCTCTGAGCGCGGCCGGTTGCTGCGCTATCTGACCCGGCGGATCGGCGGCGAGCATGCCCCGGATATGGTCCAGGAAGTATTCGCGCGCGCCGCCGGCAGCCAGCAGGCGACCCAGCTTGCCAATCCGGTCGCCTTCATCAGACGCATTACCCGCAATATGCTTATCGACAGGGCTCGCCGAAAGGAGGCGAACAAAGTCGTGCTATGTCCGTTGGACGATGAACGTCATTTGAGCGCTCCCCCGGAGCAGGGTTTGGCGATCGAAGCGCAAGACCTCTTGCGCATTTACCATAAAGCGGTCGCTGACTTGCCAGAAAAGACCCGTGTGGTTTTCCTGCTGAGTAGAGACCAGCATTTGACGAATCGGCAGATTAGCGAGAAGCTCGGGGTCACGGTGAAGGCCGTCGAATATCACATGACGCGAGCGCTCGCGTATCTTGCGACGGTCGTGGAGGCGCATCGATGA
PROTEIN sequence
Length: 173
VTEEVDLPAVLTLEQVFRSERGRLLRYLTRRIGGEHAPDMVQEVFARAAGSQQATQLANPVAFIRRITRNMLIDRARRKEANKVVLCPLDDERHLSAPPEQGLAIEAQDLLRIYHKAVADLPEKTRVVFLLSRDQHLTNRQISEKLGVTVKAVEYHMTRALAYLATVVEAHR*