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SCNpilot_expt_300_bf_scaffold_3430

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_3430_1
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..644
DNA (642bp) protein (214aa)
Asparaginase n=1 Tax=Rhizobium sp. CF142 RepID=J1TE87_9RHIZ rbh
Asparaginase {ECO:0000313|EMBL:EJJ30171.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobi
asparaginase
SCNpilot_expt_300_bf_scaffold_3430_2
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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664..1455
DNA (792bp) protein (264aa)
Amino acid ABC transporter substrate-binding protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HML8_9RHIZ rbh
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:EPE94631.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacter
periplasmic component of amino acid ABC-type transporter/signal transduction system
SCNpilot_expt_300_bf_scaffold_3430_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1567..2568)
DNA (1002bp) protein (334aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF142 RepID=J2AW08_9RHIZ rbh
Transcriptional regulator, LacI family {ECO:0000313|EMBL:CDP50585.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia s
transcriptional regulator
SCNpilot_expt_300_bf_scaffold_3430_4
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2655..4226
DNA (1572bp) protein (524aa)
N-acetylmannosamine kinase {ECO:0000313|EMBL:CDP50584.1}; EC=2.7.1.60 {ECO:0000313|EMBL:CDP50584.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiace
Transcriptional regulator/sugar kinase n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HS91_9RHIZ rbh
ROK family transcriptional regulator protein
SCNpilot_expt_300_bf_scaffold_3430_5
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4275..4505)
DNA (231bp) protein (77aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphat
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037689E9
undecaprenyl pyrophosphate phosphatase
SCNpilot_expt_300_bf_scaffold_3430_6
unknown

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4732..4974
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_3430_7
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5138..5815
DNA (678bp) protein (226aa)
Glutathione S-transferase family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R993_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB76403.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
glutathione S-transferase family protein
SCNpilot_expt_300_bf_scaffold_3430_8
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5796..6986
DNA (1191bp) protein (397aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; TaxID=443610 species
Iron-sulfur cluster-binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R994_PELHB rbh
(Fe-S)-binding protein
SCNpilot_expt_300_bf_scaffold_3430_9
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7000..7872
DNA (873bp) protein (291aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R995_PELHB rbh
Nucleoside-diphosphate-sugar epimerases {ECO:0000313|EMBL:CDP50518.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia
nucleoside-diphosphate-sugar epimerase
SCNpilot_expt_300_bf_scaffold_3430_10
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

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7869..8444
DNA (576bp) protein (192aa)
UPI0003D0179C related cluster n=1 Tax=unknown RepID=UPI0003D0179C
acetyltransferase Tax=RBG_16_Betaproteobacteria_66_20_curated
acetyltransferase, ribosomal protein N-acetylase
SCNpilot_expt_300_bf_scaffold_3430_11
Gordonia rhizosphera, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(8606..8944)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Gordonia rhizosphera NBRC 16068 RepID=K6UYW9_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:GAB88663.1}; TaxID=1108045 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia rhizosphera NBRC 16068.;"
hypothetical protein
Displaying 11 items

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