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SCNpilot_expt_300_bf_scaffold_1123

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1123_1
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(231..581)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB47_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL25031.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1123_2
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(670..2889)
DNA (2220bp) protein (740aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000362100E rbh
sulfate transporter
Sulphate transporter {ECO:0000313|EMBL:ABS69391.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophic
SCNpilot_expt_300_bf_scaffold_1123_3
Xenorhabdus bovienii, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2844..3719)
DNA (876bp) protein (292aa)
Epoxide hydrolase (EC:3.3.2.-)
Putative Epoxide hydrolase {ECO:0000313|EMBL:CBJ81260.1}; EC=3.3.2.- {ECO:0000313|EMBL:CBJ81260.1};; TaxID=406818 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacte
Putative Epoxide hydrolase n=1 Tax=Xenorhabdus bovienii (strain SS-2004) RepID=D3V3E5_XENBS
SCNpilot_expt_300_bf_scaffold_1123_4
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3819..4985
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M730_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF16840.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor
transcriptional regulator, LuxR family protein
SCNpilot_expt_300_bf_scaffold_1123_5
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5056..5628
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZLS6_METPB
Putative periplasmic protein {ECO:0000313|EMBL:AKH99476.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1123_6
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5621..6478)
DNA (858bp) protein (286aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Caulobacter sp. AP07 RepID=J2G176_9CAUL
Putative RNA polymerase sigma factor {ECO:0000313|EMBL:AKF09990.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" so
RNA polymerase ECF-subfamily sigma factor
SCNpilot_expt_300_bf_scaffold_1123_7
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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6589..7056
DNA (468bp) protein (156aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=632772 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhod
Carboxymuconolactone decarboxylase family protein n=1 Tax=Rhodococcus opacus (strain B4) RepID=C1AT41_RHOOB
carboxymuconolactone decarboxylase family protein
SCNpilot_expt_300_bf_scaffold_1123_8
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7097..7867)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I0S2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB77310.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
putative predicted protein
SCNpilot_expt_300_bf_scaffold_1123_9
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8176..9498
DNA (1323bp) protein (441aa)
Multidrug transporter n=1 Tax=Asticcacaulis sp. YBE204 RepID=V4QM52_9CAUL rbh
Multidrug transporter {ECO:0000313|EMBL:KKB11718.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
multidrug resistance protein
SCNpilot_expt_300_bf_scaffold_1123_10
beta proteobacterium KB13, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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9525..10298
DNA (774bp) protein (258aa)
3-hexulose-6-phosphate synthase n=1 Tax=beta proteobacterium KB13 RepID=B6BTQ6_9PROT
3-hexulose-6-phosphate synthase {ECO:0000313|EMBL:EDZ64934.1}; TaxID=314607 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; unclassified Methylophilales; OM43 clade.;" source="
3-hexulose-6-phosphate synthase
SCNpilot_expt_300_bf_scaffold_1123_11
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10319..10513
DNA (195bp) protein (65aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB85044.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
SCNpilot_expt_300_bf_scaffold_1123_12
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10551..11963)
DNA (1413bp) protein (471aa)
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteria
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036BAFA2 rbh
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1123_13
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12760..13347)
DNA (588bp) protein (196aa)
Ribonucleoprotein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y6Y8_9RHIZ
Ribonucleoprotein {ECO:0000313|EMBL:EHH12548.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae
RNA-binding protein
Displaying 13 items

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