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SCNpilot_expt_300_bf_scaffold_1460

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1460_1
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11..571)
DNA (561bp) protein (187aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine
tRNA(Ile)-lysidine synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R975_PELHB
tRNA(Ile)-lysidine synthetase
SCNpilot_expt_300_bf_scaffold_1460_2
unknown

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613..1047
DNA (435bp) protein (145aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1460_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(972..2045)
DNA (1074bp) protein (358aa)
TPR repeat containing exported protein, putative periplasmic protein contains a protein prenylyltransferase domain n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R976_PELHB
TPR repeat containing exported protein {ECO:0000313|EMBL:CDP52924.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia s
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1460_4
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2273..2767)
DNA (495bp) protein (165aa)
Outer membrane lipoprotein Omp16 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R977_PELHB
Outer membrane lipoprotein Omp16 {ECO:0000313|EMBL:KFC72251.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5
outer membrane lipoprotein Omp16
SCNpilot_expt_300_bf_scaffold_1460_5
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3047..4360)
DNA (1314bp) protein (438aa)
Protein TolB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R978_PELHB
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
TolB protein
SCNpilot_expt_300_bf_scaffold_1460_6
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4404..5525)
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R979_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL25194.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1460_7
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5530..5919)
DNA (390bp) protein (130aa)
Protein TolR n=1 Tax=Ahrensia sp. R2A130 RepID=E0MQN8_9RHOB
Biopolymer transporter ExbD {ECO:0000313|EMBL:KFL25195.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8
tolR; biopolymer transporter
SCNpilot_expt_300_bf_scaffold_1460_8
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5997..6710)
DNA (714bp) protein (238aa)
MotA/TolQ/ExbB proton channel family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R981_PELHB rbh
MotA/TolQ/ExbB proton channel family protein {ECO:0000313|EMBL:KFC67743.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Dev
MotA/TolQ/ExbB proton channel family protein
SCNpilot_expt_300_bf_scaffold_1460_9
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7032..7412
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R982_PELHB
CHRD domain-containing protein {ECO:0000313|EMBL:KFL25197.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1460_10
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7473..7865)
DNA (393bp) protein (131aa)
4-hydroxybenzoyl-CoA thioesterase family active site protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R983_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB06775.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
4-hydroxybenzoyl-CoA thioesterase
SCNpilot_expt_300_bf_scaffold_1460_11
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7862..8359)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VCC2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN88672.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sourc
NUDIX hydrolase
SCNpilot_expt_300_bf_scaffold_1460_12
unknown

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comp(8356..8475)
DNA (120bp) protein (40aa)

This feature has no annotations

Displaying 12 items

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