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SCNpilot_expt_300_bf_scaffold_1559

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1559_1
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3..794)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000381340A
S-adenosyl-L-homocysteine hydrolase {ECO:0000313|EMBL:KJC64117.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
adenosylhomocysteinase
SCNpilot_expt_300_bf_scaffold_1559_2
unknown

Not on your lists

comp(900..1085)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1559_3
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1262..2113)
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035DE630 rbh
Oxidoreductase {ECO:0000313|EMBL:KFA91266.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter
NADP-dependent oxidoreductase domain-containing protein
SCNpilot_expt_300_bf_scaffold_1559_4
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2273..2698)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REF0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB10438.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1559_5
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2695..3558)
DNA (864bp) protein (288aa)
Carbon-nitrogen hydrolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REF1_PELHB rbh
FIG147869: Carbon-nitrogen hydrolase {ECO:0000313|EMBL:CDP51798.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp.
carbon-nitrogen hydrolase
SCNpilot_expt_300_bf_scaffold_1559_6
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3569..3823)
DNA (255bp) protein (85aa)
Glutaredoxin 3 (Grx2) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REF2_PELHB
Glutaredoxin 3 (Grx2) {ECO:0000313|EMBL:KFC61976.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
glutaredoxin 3 (Grx2)
SCNpilot_expt_300_bf_scaffold_1559_7
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3857..4636)
DNA (780bp) protein (260aa)
Competence protein F-like protein, phosphoribosyltransferase domain protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REF3_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB10447.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
competence protein F-like protein, phosphoribosyltransferase domain protein
SCNpilot_expt_300_bf_scaffold_1559_8
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4721..5578
DNA (858bp) protein (286aa)
SAM-dependent methyltransferase, BioC-like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REF4_PELHB rbh
SAM-dependent methyltransferase, BioC-like {ECO:0000313|EMBL:CDP51801.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devos
SAM-dependent methyltransferase, BioC-like protein
SCNpilot_expt_300_bf_scaffold_1559_9
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5603..5800)
DNA (198bp) protein (66aa)
pilus assembly protein PilA n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00035DC1EA
Flp/Fap pilin component {ECO:0000313|EMBL:EUC14335.1}; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp.
SCNpilot_expt_300_bf_scaffold_1559_10
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6170..6934)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003641FCD
Uncharacterized protein {ECO:0000313|EMBL:KKB83639.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1559_11
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6934..8166)
DNA (1233bp) protein (411aa)
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REG1_PELHB rbh
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" sour
glutamate N-acetyltransferase / N-acetylglutamate synthase
SCNpilot_expt_300_bf_scaffold_1559_12
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8241..8522)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REF9_PELHB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ52904.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium
SCNpilot_expt_300_bf_scaffold_1559_13
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8646..9236
DNA (591bp) protein (197aa)
Regulatory protein TetR n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TAK2_MESCW
TetR family transcriptional regulator
Regulatory protein TetR {ECO:0000313|EMBL:ADV10751.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium cice
SCNpilot_expt_300_bf_scaffold_1559_14
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9292..10080)
DNA (789bp) protein (263aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiac
Foldase protein PrsA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REF7_PELHB
foldase protein PrsA precursor
SCNpilot_expt_300_bf_scaffold_1559_15
unknown

Not on your lists

comp(10092..10232)
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1559_16
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10943..13255
DNA (2313bp) protein (771aa)
Protein translocase subunit SecA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REF6_PELHB
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae;
protein export cytoplasm protein SecA ATPase RNA helicase
SCNpilot_expt_300_bf_scaffold_1559_17
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13369..14907
DNA (1539bp) protein (513aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H827_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF80898.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp
hypothetical protein
Displaying 17 items

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