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SCNpilot_expt_300_bf_scaffold_2094

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_2094_1
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2..1972
DNA (1971bp) protein (657aa)
Glycoside hydrolase clan GH-D n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BV21_BEUC1 rbh
glycoside hydrolase family protein
Glycoside hydrolase clan GH-D {ECO:0000313|EMBL:ACQ78395.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC
SCNpilot_expt_300_bf_scaffold_2094_2
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2207..2470)
DNA (264bp) protein (88aa)
Sugar ABC transporter n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JHM5_AGRRK
ABC transporter permease {ECO:0000313|EMBL:KFL31338.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
sugar ABC transporter
SCNpilot_expt_300_bf_scaffold_2094_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3019..3909)
DNA (891bp) protein (297aa)
Sugar ABC transporter n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JHM6_AGRRK rbh
N-Acetyl-D-glucosamine ABC transport system, perme ase protein 1 {ECO:0000313|EMBL:CDP53365.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; De
sugar ABC transporter
SCNpilot_expt_300_bf_scaffold_2094_4
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3996..5210)
DNA (1215bp) protein (405aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Rhizobium sp. AP16 RepID=J2DBT4_9RHIZ rbh
Maltose/maltodextrin ABC transporter, substrate bi nding periplasmic protein MalE {ECO:0000313|EMBL:CDP53364.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyph
sugar ABC transporter
SCNpilot_expt_300_bf_scaffold_2094_5
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5300..6094)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2WWE8_9RHIZ rbh
DNA polymerase beta subunit {ECO:0000313|EMBL:KEA08256.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;"
SCNpilot_expt_300_bf_scaffold_2094_6
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6127..7449)
DNA (1323bp) protein (441aa)
Putative alpha-L-fucosidase protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V641_9RHIZ rbh
Alpha-L-fucosidase {ECO:0000313|EMBL:KFL31334.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
alpha-L-fucosidase
SCNpilot_expt_300_bf_scaffold_2094_7
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7661..8599
DNA (939bp) protein (313aa)
Transcriptional regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JHM9_AGRRK rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:KFL28035.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp
transcriptional regulator
Displaying 7 items

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