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SCNpilot_expt_300_bf_scaffold_2165

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_2165_1
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1239)
DNA (1239bp) protein (413aa)
RNA polymerase sigma-54 factor n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8L4_PELHB rbh
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DS
RNA polymerase sigma-54 factor RpoN
SCNpilot_expt_300_bf_scaffold_2165_2
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1413..2180)
DNA (768bp) protein (256aa)
Lipopolysaccharide ABC transporter, ATP-binding protein LptB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8L5_PELHB
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB81884.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insu
lipopolysaccharide ABC transporter ATP-binding protein LptB
SCNpilot_expt_300_bf_scaffold_2165_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2177..2629)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8L6_PELHB
Protein-glutamate methylesterase family protein {ECO:0000313|EMBL:CDP53440.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="
hypothetical protein
SCNpilot_expt_300_bf_scaffold_2165_4
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2626..3264)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8L7_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB76118.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
hypothetical protein
SCNpilot_expt_300_bf_scaffold_2165_5
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3264..3878)
DNA (615bp) protein (205aa)
Ribonuclease D related protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8L8_PELHB rbh
3'-5' exonuclease {ECO:0000313|EMBL:KKC34467.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
ribonuclease D related protein
SCNpilot_expt_300_bf_scaffold_2165_6
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4008..5180
DNA (1173bp) protein (391aa)
Putative nucleoside-diphosphate sugar epimerase n=1 Tax=Phyllobacterium sp. YR531 RepID=J3C4R8_9RHIZ
Capsular biosynthesis protein {ECO:0000313|EMBL:KKC34566.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophil
polysaccharide biosynthesis protein CapD
SCNpilot_expt_300_bf_scaffold_2165_7
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5132..5803
DNA (672bp) protein (224aa)
capD; UDP-N-acetylglucosamine 4,6-dehydratase (EC:4.2.1.-)
Capsular polysaccharide biosynthesis protein capD n=1 Tax=Brucella sp. BO2 PF9_9RHIZ">RepID=E2PPF9_9RHIZ
Capsular biosynthesis protein {ECO:0000313|EMBL:KKC34566.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophil
SCNpilot_expt_300_bf_scaffold_2165_8
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5811..6605
DNA (795bp) protein (265aa)
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HV64_AZOC5 rbh
metallophosphoesterase
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA {ECO:0000256|HAMAP-Rule:MF_00905}; Short=3',5'-cyclic AMP phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_00905};; Short=cAMP phosphodiesterase
SCNpilot_expt_300_bf_scaffold_2165_9
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7105..7734
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZYI9_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH89101.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Stark
SCNpilot_expt_300_bf_scaffold_2165_10
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7855..8256)
DNA (402bp) protein (134aa)
SEC-independent protein translocase protein TatC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTM3_9RHIZ
Hemoglobin-like protein {ECO:0000313|EMBL:KFC71264.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein, globin family related
SCNpilot_expt_300_bf_scaffold_2165_11
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8337..9020)
DNA (684bp) protein (228aa)
O-acetylhomoserine aminocarboxypropyltransferase {ECO:0000313|EMBL:KKB85833.1}; EC=2.5.1.49 {ECO:0000313|EMBL:KKB85833.1};; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizob
O-acetylhomoserine/O-acetylserine sulfhydrylase (EC:2.5.1.49)
O-acetylhomoserine (Thiol)-lyase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZRP5_9SPHN
SCNpilot_expt_300_bf_scaffold_2165_12
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10001..10162
DNA (162bp) protein (54aa)
Putative acetyltransferase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VT43_RHILT
GCN5 family acetyltransferase {ECO:0000313|EMBL:KGE01202.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;
GCN5 family N-acetyltransferase
SCNpilot_expt_300_bf_scaffold_2165_13
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10535..11299)
DNA (765bp) protein (255aa)
Putative dioxygenase n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CJ67_9RHOB rbh
Phytanoyl-CoA dioxygenase {ECO:0000313|EMBL:KKB85520.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.
Phytanoyl-CoA dioxygenase
SCNpilot_expt_300_bf_scaffold_2165_14
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11445..12227
DNA (783bp) protein (261aa)
Transcriptional regulator, AraC family n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y1R5_PARAH
Uncharacterized protein {ECO:0000313|EMBL:KKC37290.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudi
transcriptional regulator, AraC family
SCNpilot_expt_300_bf_scaffold_2165_15
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13135..13290
DNA (156bp) protein (52aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL26324.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_300_bf_scaffold_2165_16
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13422..15635
DNA (2214bp) protein (738aa)
Phycocyanin alpha phycocyanobilin lyase n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CJ84_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KFL27513.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_300_bf_scaffold_2165_17
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

comp(15851..16954)
DNA (1104bp) protein (368aa)
Putative uncharacterized protein Tax=RBG_16_Aminicenantes_63_16_curated
Putative uncharacterized protein id=3296019 bin=GWF2_Planctomycete_41_51 species=Planctomyces maris genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
Displaying 17 items

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