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SCNpilot_expt_300_bf_scaffold_2362

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_2362_1
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..296
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030ECC8D
Uncharacterized protein {ECO:0000313|EMBL:KKB11017.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
RES domain protein
SCNpilot_expt_300_bf_scaffold_2362_2
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(344..991)
DNA (648bp) protein (216aa)
TetR-lik transcriptional regulator n=1 Tax=Alcanivorax pacificus W11-5 RepID=K2HKN8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKC32678.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
TetR-lik transcriptional regulator
SCNpilot_expt_300_bf_scaffold_2362_3
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1024..1959)
DNA (936bp) protein (312aa)
Putative oxidoreductase/Short-chain dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9D1_PELHB rbh
FabG protein {ECO:0000313|EMBL:BAQ45601.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticu
putative oxidoreductase/Short-chain dehydrogenase
SCNpilot_expt_300_bf_scaffold_2362_4
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2102..3310)
DNA (1209bp) protein (403aa)
Branched-chain amino acid ABC transporter, amino acid-binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG76_PELHB
branched-chain amino acid ABC transporter, amino acid-binding protein
Branched-chain amino acid ABC transporter, amino acid-binding protein {ECO:0000313|EMBL:AEQ53052.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiacea
SCNpilot_expt_300_bf_scaffold_2362_5
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4947..6317
DNA (1371bp) protein (457aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG74_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB11105.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_2362_6
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6335..6805
DNA (471bp) protein (157aa)
GCN5-like N-acetyltransferase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YJF5_9RHIZ
GCN5-like N-acetyltransferase {ECO:0000313|EMBL:CDX39251.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobi
acetyltransferase
SCNpilot_expt_300_bf_scaffold_2362_7
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6916..7332
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG73_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB77612.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_2362_8
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7405..8868
DNA (1464bp) protein (488aa)
Pyruvate carboxylase {ECO:0000256|PIRNR:PIRNR001594}; EC=6.4.1.1 {ECO:0000256|PIRNR:PIRNR001594};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae;
Pyruvate carboxylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG72_PELHB
pyruvate carboxyl transferase
SCNpilot_expt_300_bf_scaffold_2362_9
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8852..10798
DNA (1947bp) protein (649aa)
Pyruvate carboxylase {ECO:0000256|PIRNR:PIRNR001594}; EC=6.4.1.1 {ECO:0000256|PIRNR:PIRNR001594};; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae;
Pyruvate carboxylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG72_PELHB
pyruvate carboxyl transferase
SCNpilot_expt_300_bf_scaffold_2362_10
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10802..11221)
DNA (420bp) protein (140aa)
UPF0310 protein Mesop_1794 n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y6M6_MESOW
UPF0310 protein VW35_04720 {ECO:0000256|HAMAP-Rule:MF_00771}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_2362_11
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11284..11592)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG70_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB77615.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_2362_12
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11704..12291
DNA (588bp) protein (196aa)
Regulatory protein TetR n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F3M9_SPHCR
regulatory protein TetR
Regulatory protein TetR {ECO:0000313|EMBL:AEG51041.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlo
SCNpilot_expt_300_bf_scaffold_2362_13
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12303..12683
DNA (381bp) protein (127aa)
Endoribonuclease L-PSP n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2U5R6_9DELT
Endoribonuclease L-PSP {ECO:0000313|EMBL:KKB13218.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
endoribonuclease L-PSP
SCNpilot_expt_300_bf_scaffold_2362_14
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12738..13175)
DNA (438bp) protein (146aa)
Nucleoside diphosphate kinase regulator n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3JKB9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL32575.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
rnk1; transcription elongation factor GreA/GreB
Displaying 14 items

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