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SCNpilot_expt_300_bf_scaffold_2378

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_2378_1
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..770)
DNA (768bp) protein (256aa)
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|
K(+)-insensitive pyrophosphate-energized proton pump n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6W4_PELHB
pyrophosphate-energized proton pump
SCNpilot_expt_300_bf_scaffold_2378_2
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(936..1244)
DNA (309bp) protein (103aa)
UPI0003CFC016 related cluster n=1 Tax=unknown RepID=UPI0003CFC016
UPF0235 protein VW29_07120 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM
hypothetical protein
SCNpilot_expt_300_bf_scaffold_2378_3
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1241..1678)
DNA (438bp) protein (146aa)
Nitrate/nitrite transport system permease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H594_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KKB82345.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
acetyltransferase, GNAT family protein
SCNpilot_expt_300_bf_scaffold_2378_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1689..1976)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036CACEE
Uncharacterized protein {ECO:0000313|EMBL:KFC63710.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_2378_5
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2123..2962)
DNA (840bp) protein (280aa)
Peptidoglycan-binding lysin domain protein n=1 Tax=Mesotoga sp. PhosAc3 RepID=N1JZL2_9THEM
Uncharacterized protein {ECO:0000313|EMBL:KKC35412.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudi
LysM domain-containing protein,prolyl oligopeptidase family protein
SCNpilot_expt_300_bf_scaffold_2378_6
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3105..3710)
DNA (606bp) protein (202aa)
SNARE associated Golgi protein n=1 Tax=uncultured organism RepID=T1WAB4_9ZZZZ
Alkaline phosphatase {ECO:0000313|EMBL:KKC31668.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
DedA family membrane-associated protein
SCNpilot_expt_300_bf_scaffold_2378_7
unknown

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comp(3735..4019)
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2378_8
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4111..5925)
DNA (1815bp) protein (605aa)
GTP-binding protein TypA/BipA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6X5_PELHB rbh
GTP-binding protein TypA {ECO:0000313|EMBL:KKB85311.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.
GTP-binding protein TypA
SCNpilot_expt_300_bf_scaffold_2378_9
Agrobacterium fabrum, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6114..6506
DNA (393bp) protein (131aa)
Transcriptional regulator, MarR family n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CEU4_AGRT5
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:AAK90193.1}; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agr
SCNpilot_expt_300_bf_scaffold_2378_10
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6547..6933)
DNA (387bp) protein (129aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6X6_PELHB
Glyoxalase {ECO:0000313|EMBL:KKB12336.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_300_bf_scaffold_2378_11
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7028..7618)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6X7_PELHB
RNA polymerase sigma factor {ECO:0000313|EMBL:KFC68607.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_2378_12
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7685..8068)
DNA (384bp) protein (128aa)
glyoxalase n=1 Tax=Teredinibacter turnerae RepID=UPI00037D2445
Uncharacterized protein {ECO:0000313|EMBL:KKC31391.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_300_bf_scaffold_2378_13
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8167..8328)
DNA (162bp) protein (54aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:CDP53756.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyp
Displaying 13 items

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