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SCNpilot_expt_300_bf_scaffold_2971

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_2971_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..231)
DNA (231bp) protein (77aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
pyridoxamine 5''''-phosphate oxidase n=1 Tax=Xanthobacteraceae RepID=UPI000367DAAC
SCNpilot_expt_300_bf_scaffold_2971_2
unknown

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comp(236..1177)
DNA (942bp) protein (314aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2971_3
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1289..2662)
DNA (1374bp) protein (458aa)
metal-dependent phosphohydrolase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037AD601 rbh
response regulator
Response regulator {ECO:0000313|EMBL:AEQ52157.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halot
SCNpilot_expt_300_bf_scaffold_2971_4
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2763..3578)
DNA (816bp) protein (272aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synth
YrdC/Sua5 family protein, required for threonylcarbamoyladenosine (T(6)A) formation in tRNA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBX2_PELHB
YrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA
SCNpilot_expt_300_bf_scaffold_2971_5
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3646..4575
DNA (930bp) protein (310aa)
Acetylspermidine deacetylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBX1_PELHB rbh
Acetoin utilization protein {ECO:0000313|EMBL:KFL27120.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8
acetylspermidine deacetylase
SCNpilot_expt_300_bf_scaffold_2971_6
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4601..4855
DNA (255bp) protein (85aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclea
Exodeoxyribonuclease 7 small subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBX0_PELHB
exodeoxyribonuclease VII small subunit
SCNpilot_expt_300_bf_scaffold_2971_7
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4963..5565
DNA (603bp) protein (201aa)
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBW9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB08694.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
cytochrome oxidase biogenesis protein Sco1/SenC/PrrC copper metallochaperone
SCNpilot_expt_300_bf_scaffold_2971_8
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5562..6302
DNA (741bp) protein (247aa)
RNA binding methyltransferase FtsJ like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBW8_PELHB
Hemolysin {ECO:0000313|EMBL:KKC41485.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
RNA binding methyltransferase FtsJ like protein
SCNpilot_expt_300_bf_scaffold_2971_9
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6299..6904)
DNA (606bp) protein (202aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB83169.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
SCNpilot_expt_300_bf_scaffold_2971_10
Corynebacterium efficiens, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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7175..7465
DNA (291bp) protein (97aa)
Uncharacterized protein {ECO:0000313|EMBL:BAC18553.1}; TaxID=196164 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium efficiens (stra
Displaying 10 items

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