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SCNpilot_expt_300_bf_scaffold_966

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_966_1
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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196..966
DNA (771bp) protein (257aa)
Permease YjgP/YjgQ n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGK3_PELHB
Permease YjgP/YjgQ {ECO:0000313|EMBL:KFC67229.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
permease YjgP/YjgQ
SCNpilot_expt_300_bf_scaffold_966_2
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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960..1214
DNA (255bp) protein (85aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB09179.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_300_bf_scaffold_966_3
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1211..2215
DNA (1005bp) protein (335aa)
Permease YjgP/YjgQ n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGK2_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB83075.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
permease YjgP/YjgQ
SCNpilot_expt_300_bf_scaffold_966_4
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3119..4360
DNA (1242bp) protein (414aa)
Organic solvent tolerance protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGK1_PELHB
LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; Flags: Precursor;; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphom
organic solvent tolerance protein
SCNpilot_expt_300_bf_scaffold_966_5
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4502..5377
DNA (876bp) protein (292aa)
SurA N-terminal domain family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGK0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL26853.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SurA N-terminal domain family protein
SCNpilot_expt_300_bf_scaffold_966_6
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5538..6566
DNA (1029bp) protein (343aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosph
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGJ9_PELHB rbh
4-hydroxythreonine-4-phosphate dehydrogenase
SCNpilot_expt_300_bf_scaffold_966_7
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6614..7048)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11IP1_MESSB
Uncharacterized protein {ECO:0000313|EMBL:KKC34495.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_966_8
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7174..8004
DNA (831bp) protein (277aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGJ8_PELHB
dimethyladenosine transferase
SCNpilot_expt_300_bf_scaffold_966_9
unknown

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8004..8261
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_966_10
unknown

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comp(8279..8572)
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_966_11
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8756..9394)
DNA (639bp) protein (213aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_0
Guanylate kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGJ5_PELHB
guanylate kinase
SCNpilot_expt_300_bf_scaffold_966_12
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9455..10345)
DNA (891bp) protein (297aa)
Protein YicC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGJ4_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB85772.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
protein YicC
SCNpilot_expt_300_bf_scaffold_966_13
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10345..11487)
DNA (1143bp) protein (381aa)
Protein YceG like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGJ3_PELHB rbh
FIG004453: protein YceG like {ECO:0000313|EMBL:CDP52387.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.
protein YceG like protein
SCNpilot_expt_300_bf_scaffold_966_14
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11578..12816)
DNA (1239bp) protein (413aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizob
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGJ2_PELHB
3-oxoacyl-ACP synthase
SCNpilot_expt_300_bf_scaffold_966_15
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12831..13067)
DNA (237bp) protein (79aa)
Acyl carrier protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGJ1_PELHB
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteri
acyl carrier protein
SCNpilot_expt_300_bf_scaffold_966_16
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13364..14104)
DNA (741bp) protein (247aa)
3-oxoacyl-(Acyl-carrier protein) reductase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGJ0_PELHB rbh
3-oxoacyl-ACP synthase {ECO:0000313|EMBL:KKC34638.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
3-oxoacyl-ACP reductase
SCNpilot_expt_300_bf_scaffold_966_17
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14131..15081)
DNA (951bp) protein (317aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizob
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGI9_PELHB
malonyl CoA-ACP transacylase
SCNpilot_expt_300_bf_scaffold_966_18
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15196..16110)
DNA (915bp) protein (305aa)
threonine dehydratase (EC:4.3.1.19)
Bll1413 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89UK3_BRADU rbh
Bll1413 protein {ECO:0000313|EMBL:BAC46678.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoeffici
Displaying 18 items

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