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SCNpilot_expt_300_bf_scaffold_532

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Displaying items 1-30 of 148 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_532_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1303
DNA (1302bp) protein (434aa)
peptidase C69 n=1 Tax=Thiobacillus thioparus RepID=UPI00037A3772 rbh
microcin-processing peptidase 1; K03592 PmbA protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
microcin-processing peptidase 1
SCNpilot_expt_300_bf_scaffold_532_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1304..1915
DNA (612bp) protein (204aa)
putative lipase id=12498667 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
lipase
Putative lipase {ECO:0000313|EMBL:AAZ98102.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrifi
SCNpilot_expt_300_bf_scaffold_532_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1912..2451
DNA (540bp) protein (180aa)
TRAP transporter, small subunit id=12498668 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
TRAP transporter, small subunit Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
TRAP transporter, small subunit
SCNpilot_expt_300_bf_scaffold_532_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2453..3844
DNA (1392bp) protein (464aa)
TRAP dicarboxylate transporter subunit DctM id=12498669 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
TRAP dicarboxylate transporter subunit DctM Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
TRAP dicarboxylate transporter subunit DctM
SCNpilot_expt_300_bf_scaffold_532_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3928..4254
DNA (327bp) protein (109aa)
peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales;
peptidyl-prolyl cis-trans isomerase n=1 Tax=Thiobacillus thioparus RepID=UPI000373F02B
SCNpilot_expt_300_bf_scaffold_532_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4294..5685
DNA (1392bp) protein (464aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C8859
Elongator protein 3/MiaB/NifB
UPF0313 protein Tbd_2153 {ECO:0000256|HAMAP-Rule:MF_01251}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;
SCNpilot_expt_300_bf_scaffold_532_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6063..6554
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C8859
Elongator protein 3/MiaB/NifB Tax=GWE1_Thiobacillus_62_9_curated
Elongator protein 3/MiaB/NifB
SCNpilot_expt_300_bf_scaffold_532_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6589..6903
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037A091E
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
SCNpilot_expt_300_bf_scaffold_532_9
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6945..8285)
DNA (1341bp) protein (447aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae;
Histidine kinase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AFP0_9PROT rbh
histidine kinase
SCNpilot_expt_300_bf_scaffold_532_10
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8282..8944)
DNA (663bp) protein (221aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9U3_9PROT rbh
mmfR; two component transcriptional regulator, winged helix family
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:BAN34710.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulf
SCNpilot_expt_300_bf_scaffold_532_11
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8973..9731)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJK9_9PROT
mmfC2; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN34709.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella deni
SCNpilot_expt_300_bf_scaffold_532_12
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9728..10513)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABH3_9PROT rbh
Membrane protein {ECO:0000313|EMBL:GAO35433.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_532_13
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10566..10901)
DNA (336bp) protein (112aa)
Propeptide PepSY and peptidase M4 n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B223_9PROT
Peptidase M4 {ECO:0000313|EMBL:GAO35432.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
propeptide PepSY and peptidase M4
SCNpilot_expt_300_bf_scaffold_532_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11055..11450)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000369FFE5
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
SCNpilot_expt_300_bf_scaffold_532_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11533..12009)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000375CEF1 rbh
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
SCNpilot_expt_300_bf_scaffold_532_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12057..12797)
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037B6723 rbh
hypothetical protein; K09122 hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
SCNpilot_expt_300_bf_scaffold_532_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12915..13043)
DNA (129bp) protein (43aa)
hypothetical protein id=1329932 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_300_bf_scaffold_532_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13178..14170)
DNA (993bp) protein (331aa)
glycerol kinase; K00864 glycerol kinase [EC:2.7.1.30] Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C0FF8
glpA; glycerol-3-phosphate dehydrogenase
SCNpilot_expt_300_bf_scaffold_532_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14179..14736)
DNA (558bp) protein (186aa)
glycerol kinase; K00864 glycerol kinase [EC:2.7.1.30] Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C0FF8
glpA; FAD-dependent glycerol-3-phosphate dehydrogenase subunit
SCNpilot_expt_300_bf_scaffold_532_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14718..15770)
DNA (1053bp) protein (351aa)
glycerol kinase; K00864 glycerol kinase [EC:2.7.1.30] Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003801F17
glpK; glycerol kinase
SCNpilot_expt_300_bf_scaffold_532_21
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

15788..16159
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Megasphaera elsdenii CAG:570 RepID=R7MXC8_9FIRM
Uncharacterized protein Tax=GWF2_Firmicutes_51_9_curated
hypothetical protein
SCNpilot_expt_300_bf_scaffold_532_22
unknown

Not on your lists

16576..17142
DNA (567bp) protein (189aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_532_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17896..18630)
DNA (735bp) protein (245aa)
putative ubiquinone biosynthesis monooxygenase Coq7; K06134 ubiquinone biosynthesis monooxygenase Coq7 [EC:1.14.13.-] Tax=GWE1_Thiobacillus_62_9_curated
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase n=1 Tax=Thiobacillus thioparus RepID=UPI0003671C18
ubiquinone biosynthesis monooxygenase Coq7
SCNpilot_expt_300_bf_scaffold_532_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18627..19715)
DNA (1089bp) protein (363aa)
ABC transporter substrate-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003754871 rbh
transporter, periplasmic component Tax=GWE1_Thiobacillus_62_9_curated
transporter, periplasmic component
SCNpilot_expt_300_bf_scaffold_532_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19809..21053
DNA (1245bp) protein (415aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase id=1329927 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
SCNpilot_expt_300_bf_scaffold_532_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21139..21621
DNA (483bp) protein (161aa)
NrdR family transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI00036D4CDB rbh
nrdR; transcriptional regulator NrdR
Transcriptional repressor NrdR {ECO:0000255|HAMAP-Rule:MF_00440}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thi
SCNpilot_expt_300_bf_scaffold_532_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21667..22716
DNA (1050bp) protein (350aa)
5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amin
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26)
diaminohydroxyphosphoribosylaminopyrimidine deaminase n=1 Tax=Thiobacillus thioparus RepID=UPI0003638709 rbh
SCNpilot_expt_300_bf_scaffold_532_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22713..23459
DNA (747bp) protein (249aa)
SAM-dependent methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00036175C0 rbh
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
SCNpilot_expt_300_bf_scaffold_532_29
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23467..24153)
DNA (687bp) protein (229aa)
Putative pyruvate radical-activating enzyme n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGX0_THIDA rbh
pyruvate radical-activating enzyme
Putative pyruvate radical-activating enzyme {ECO:0000313|EMBL:AAZ98123.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" so
SCNpilot_expt_300_bf_scaffold_532_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24156..24344)
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036FD2D8
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
Displaying items 1-30 of 148 in total

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