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SCNpilot_expt_300_bf_scaffold_374

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_374_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22..426)
DNA (405bp) protein (135aa)
BadM/Rrf2 family transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3K4_9GAMM
BadM/Rrf2 family transcriptional regulator {ECO:0000313|EMBL:EIL94045.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sour
transcriptional regulator
SCNpilot_expt_300_bf_scaffold_374_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

526..1203
DNA (678bp) protein (226aa)
type 12 methyltransferase; K15256 tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Type 12 methyltransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZA3_9GAMM rbh
type 12 methyltransferase
SCNpilot_expt_300_bf_scaffold_374_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1348..2103)
DNA (756bp) protein (252aa)
short chain dehydrogenase (EC:1.1.1.-) Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
short chain dehydrogenase (EC:1.1.1.-)
Short chain dehydrogenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VML4_9GAMM rbh
SCNpilot_expt_300_bf_scaffold_374_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2302..3036)
DNA (735bp) protein (245aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3K6_9GAMM rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EIL94047.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source=
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
SCNpilot_expt_300_bf_scaffold_374_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3126..3725)
DNA (600bp) protein (200aa)
2-dehydropantoate 2-reductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3K7_9GAMM rbh
2-dehydropantoate 2-reductase {ECO:0000313|EMBL:EIL94048.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanoba
2-dehydropantoate 2-reductase
SCNpilot_expt_300_bf_scaffold_374_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3854..4759
DNA (906bp) protein (302aa)
LysR family transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3K8_9GAMM rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EIL94049.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="R
transcriptional regulator
SCNpilot_expt_300_bf_scaffold_374_7
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5233..6138)
DNA (906bp) protein (302aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Acidovorax sp. CF316 RepID=J1EGG8_9BURK rbh
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:EJE51354.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" sour
AraC family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_374_8
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6274..7062
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KJH7_9BURK rbh
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
hypothetical protein
SCNpilot_expt_300_bf_scaffold_374_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7290..7796
DNA (507bp) protein (169aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF
Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBE6_9GAMM rbh
methylated-DNA--protein-cysteine methyltransferase
SCNpilot_expt_300_bf_scaffold_374_10
unknown

Not on your lists

comp(7955..8545)
DNA (591bp) protein (197aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_374_11
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8780..9211)
DNA (432bp) protein (144aa)
Uncharacterized protein {ECO:0000313|EMBL:KGI77439.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas s
SCNpilot_expt_300_bf_scaffold_374_12
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9568..10119
DNA (552bp) protein (184aa)
LemA family protein n=1 Tax=Thiocapsa marina 5811 RepID=F9U802_9GAMM
lema family protein; K03744 LemA protein Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
LemA family protein
SCNpilot_expt_300_bf_scaffold_374_13
BJP_08E140C01_Desulfomicrobium_58_14, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10116..11864
DNA (1749bp) protein (583aa)
Putative transmembrane signal peptide protein n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LSW3_DESBD
transmembrane signal peptide protein
Tax=BJP_08E140C01_Desulfomicrobium_58_14
SCNpilot_expt_300_bf_scaffold_374_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12133..12702
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFE0_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL98181.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter t
Peroxiredoxin
SCNpilot_expt_300_bf_scaffold_374_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12743..13972)
DNA (1230bp) protein (410aa)
Major facilitator superfamily protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBE5_9GAMM rbh
Major facilitator superfamily protein {ECO:0000313|EMBL:EIL96786.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="R
major facilitator superfamily transporter
SCNpilot_expt_300_bf_scaffold_374_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14288..15958)
DNA (1671bp) protein (557aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NHP9_9GAMM rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89617.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sourc
SCNpilot_expt_300_bf_scaffold_374_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16412..17215
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NPP6_9GAMM rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89616.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sourc
SCNpilot_expt_300_bf_scaffold_374_18
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17328..17969
DNA (642bp) protein (214aa)
Uncharacterized protein {ECO:0000313|EMBL:EZP37279.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacter
hypothetical protein id=5079109 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
SCNpilot_expt_300_bf_scaffold_374_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17986..18741)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBE7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96788.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter t
mtfA; Protein MtfA
SCNpilot_expt_300_bf_scaffold_374_20
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18836..22180)
DNA (3345bp) protein (1115aa)
Cyclic di-GMP phosphodiesterase Gmr {ECO:0000313|EMBL:KFB78270.1}; EC=3.1.4.52 {ECO:0000313|EMBL:KFB78270.1};; Flags: Precursor;; TaxID=1453999 species="Bacteria; Proteobacteria; Betaproteobacteria; C
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00037444C2
diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
SCNpilot_expt_300_bf_scaffold_374_21
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

22596..23090
DNA (495bp) protein (165aa)
cupin n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000362924F
anti-ECFsigma factor, ChrR Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
cupin
SCNpilot_expt_300_bf_scaffold_374_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23110..23658)
DNA (549bp) protein (183aa)
Lipoprotein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVP6_9GAMM
Lipoprotein {ECO:0000313|EMBL:EIL91287.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli
SCNpilot_expt_300_bf_scaffold_374_23
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23677..24744)
DNA (1068bp) protein (356aa)
Putative uncharacterized protein n=2 Tax=Xanthomonas campestris RepID=Q4UVZ7_XANC8 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGM51829.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concret
hypothetical protein
SCNpilot_expt_300_bf_scaffold_374_24
unknown

Not on your lists

25217..25549
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_374_25
Methyloglobulus morosus, Methyloglobulus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25619..26677
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5DZI4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ESS72706.1}; TaxID=1116472 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloglobulus.;" source="Methyloglobul
hypothetical protein
SCNpilot_expt_300_bf_scaffold_374_26
unknown

Not on your lists

26716..28128
DNA (1413bp) protein (471aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_374_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28185..28850
DNA (666bp) protein (222aa)
Glutathione S-transferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NPM8_9GAMM rbh
glutathione S-transferase
Glutathione S-transferase {ECO:0000313|EMBL:AGG89601.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sou
SCNpilot_expt_300_bf_scaffold_374_28
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28893..29642)
DNA (750bp) protein (250aa)
ubiG; 3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:CCH87731.1}; EC=2.1.1.64 {ECO:0000313|EMBL:CCH87731.1};; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophi
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EWG8_MODMB
SCNpilot_expt_300_bf_scaffold_374_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29683..30366)
DNA (684bp) protein (228aa)
Short chain dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Z9_9GAMM rbh
Short chain dehydrogenase {ECO:0000313|EMBL:EIL95240.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter
protein DitG
SCNpilot_expt_300_bf_scaffold_374_30
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(30439..31665)
DNA (1227bp) protein (409aa)
Peptidase M24 n=1 Tax=mine drainage metagenome RepID=E6QK81_9ZZZZ
Xaa-Pro aminopeptidase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
peptidase M24
Displaying items 1-30 of 44 in total

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