ggKbase home page

SCNpilot_expt_300_bf_scaffold_538

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_538_1
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

178..942
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VRY0_9GAMM rbh
hypothetical protein Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
hypothetical protein
SCNpilot_expt_300_bf_scaffold_538_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(950..1672)
DNA (723bp) protein (241aa)
Glutamine amidotransferase {ECO:0000313|EMBL:EIL98238.1}; EC=6.3.5.2 {ECO:0000313|EMBL:EIL98238.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonada
Glutamine amidotransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFJ7_9GAMM rbh
GMP synthase family protein
SCNpilot_expt_300_bf_scaffold_538_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1700..3520)
DNA (1821bp) protein (607aa)
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VRY2_9GAMM rbh
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB {ECO:0000313|EMBL:EIL89973.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xan
type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
SCNpilot_expt_300_bf_scaffold_538_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3620..4537
DNA (918bp) protein (306aa)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA syntheta
Glycine--tRNA ligase alpha subunit n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQQ0_9GAMM rbh
glycyl-tRNA synthetase
SCNpilot_expt_300_bf_scaffold_538_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4534..6681
DNA (2148bp) protein (716aa)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetas
glycyl-tRNA synthetase beta chain (EC:6.1.1.14)
Glycine--tRNA ligase beta subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFK0_9GAMM rbh
SCNpilot_expt_300_bf_scaffold_538_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6734..7309)
DNA (576bp) protein (192aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NJ09_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90889.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter de
SCNpilot_expt_300_bf_scaffold_538_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7593..9467
DNA (1875bp) protein (625aa)
Fatty acid permease / acyltransferase fusion protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFK3_9GAMM rbh
Fatty acid permease / acyltransferase fusion protein {ECO:0000313|EMBL:EIL98244.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobact
1-acyl-sn-glycerol-3-phosphate acyltransferase
SCNpilot_expt_300_bf_scaffold_538_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9543..10412)
DNA (870bp) protein (290aa)
Membrane protein required for beta-lactamase induction n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFK4_9GAMM rbh
Membrane protein required for beta-lactamase induction {ECO:0000313|EMBL:EIL98245.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanoba
membrane protein required for beta-lactamase induction
SCNpilot_expt_300_bf_scaffold_538_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10480..11121)
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000366A38F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87232.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter de
SCNpilot_expt_300_bf_scaffold_538_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11194..12168)
DNA (975bp) protein (325aa)
Zn-finger containing NTP pyrophosphohydrolase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ04_9GAMM rbh
Zn-finger containing NTP pyrophosphohydrolase
Zn-finger containing NTP pyrophosphohydrolase {ECO:0000313|EMBL:EIL98247.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" s
SCNpilot_expt_300_bf_scaffold_538_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12179..12547)
DNA (369bp) protein (123aa)
Iron-sulfur cluster insertion protein ErpA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFK7_9GAMM
Iron-sulfur cluster assembly accessory protein Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Iron-sulfur cluster assembly accessory protein
SCNpilot_expt_300_bf_scaffold_538_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12594..13028)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2H3_9GAMM
Integral membrane protein CcmA involved in cell shape determination Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Integral membrane protein CcmA involved in cell shape determination
SCNpilot_expt_300_bf_scaffold_538_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12974..13708)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2H4_9GAMM rbh
hypothetical protein Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
hypothetical protein
SCNpilot_expt_300_bf_scaffold_538_14
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13823..14293)
DNA (471bp) protein (157aa)
Ferroxidase {ECO:0000256|PIRNR:PIRNR002560}; EC=1.16.3.1 {ECO:0000256|PIRNR:PIRNR002560};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhod
Bacterioferritin n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLQ8_9GAMM
bacterioferritin
SCNpilot_expt_300_bf_scaffold_538_15
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14403..14600)
DNA (198bp) protein (66aa)
Bacterioferritin-associated ferredoxin n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFL1_9GAMM
bacterioferritin-associated ferredoxin Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
bacterioferritin-associated ferredoxin
SCNpilot_expt_300_bf_scaffold_538_16
unknown

Not on your lists

comp(14703..15350)
DNA (648bp) protein (216aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_538_17
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15355..18177)
DNA (2823bp) protein (941aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. KH32C RepID=H0Q5X3_9RHOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL27386.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_expt_300_bf_scaffold_538_18
unknown

Not on your lists

comp(18177..18959)
DNA (783bp) protein (261aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_538_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19060..19620)
DNA (561bp) protein (187aa)
RNA pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016246}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016219};; (Di)nucleoside polyphosphate hy
RNA pyrophosphohydrolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFL2_9GAMM rbh
NTP pyrophosphohydrolase
SCNpilot_expt_300_bf_scaffold_538_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19924..20286
DNA (363bp) protein (121aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000256|PIRNR:PIRNR006113}; EC=4.-.-.- {ECO:0000256|PIRNR:PIRNR006113};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomo
6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIF1_9GAMM
queuosine biosynthesis protein QueD
SCNpilot_expt_300_bf_scaffold_538_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20439..20825
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2K5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93696.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
Phasin protein
SCNpilot_expt_300_bf_scaffold_538_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21084..21449
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFM8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL98269.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter t
ATP synthase I chain
SCNpilot_expt_300_bf_scaffold_538_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21453..22526
DNA (1074bp) protein (358aa)
ATP synthase subunit a n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLS4_9GAMM rbh
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:
F0F1-type ATP synthase, alpha subunit
SCNpilot_expt_300_bf_scaffold_538_24
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22616..23086
DNA (471bp) protein (157aa)
ATP synthase subunit b n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2K9_9GAMM
ATP synthase, F0 subunit b Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
ATP synthase, F0 subunit b
SCNpilot_expt_300_bf_scaffold_538_25
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23090..23623
DNA (534bp) protein (178aa)
ATP synthase subunit delta n=1 Tax=Rhodanobacter denitrificans RepID=M4NTL5_9GAMM rbh
ATP synthase F1 subcomplex delta subunit Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
ATP synthase F1 subcomplex delta subunit
SCNpilot_expt_300_bf_scaffold_538_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23835..25385
DNA (1551bp) protein (517aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit a
ATP synthase subunit alpha n=2 Tax=Rhodanobacter denitrificans RepID=I4WMX5_9GAMM rbh
proton translocating ATP synthase, F1 alpha subunit
SCNpilot_expt_300_bf_scaffold_538_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25604..26377
DNA (774bp) protein (258aa)
ATP synthase gamma chain n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFN4_9GAMM
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1163
ATP synthase F1 subcomplex gamma subunit
SCNpilot_expt_300_bf_scaffold_538_28
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26568..27920
DNA (1353bp) protein (451aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit bet
ATP synthase subunit beta n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLT0_9GAMM
ATP synthase F0F1 subunit beta
SCNpilot_expt_300_bf_scaffold_538_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28037..28459
DNA (423bp) protein (141aa)
ATP synthase epsilon chain n=1 Tax=Rhodanobacter denitrificans RepID=M4NL78_9GAMM
ATP synthase, F1 epsilon subunit
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxI
SCNpilot_expt_300_bf_scaffold_538_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28484..29056)
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034615D5
Protein of unknown function (DUF3016)
Uncharacterized protein {ECO:0000313|EMBL:AGG87612.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sourc
Displaying items 1-30 of 55 in total

View Taxonomy