ggKbase home page

SCNpilot_expt_300_bf_scaffold_609

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_609_1
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(138..281)
DNA (144bp) protein (48aa)
ISXo8 transposase n=1 Tax=Acidovorax sp. NO-1 RepID=H0C1S0_9BURK
Transposase {ECO:0000313|EMBL:KGY61963.1}; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;
hypothetical protein
SCNpilot_expt_300_bf_scaffold_609_2
unknown

Not on your lists

662..796
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_609_3
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1100..3805
DNA (2706bp) protein (902aa)
Serine/threonine protein kinase n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SKB6_STRM5 rbh
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:ACF51834.1}; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomona
SCNpilot_expt_300_bf_scaffold_609_4
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4171..5940
DNA (1770bp) protein (590aa)
ABC transporter ATP-binding protein n=1 Tax=Dyella japonica RepID=UPI0003167AD8
ABC transporter
ABC transporter {ECO:0000313|EMBL:AHX13610.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_expt_300_bf_scaffold_609_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5994..6737)
DNA (744bp) protein (248aa)
pyridoxine 5'-phosphate synthase (EC:2.6.99.2)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279,
Pyridoxine 5'-phosphate synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUJ4_9GAMM rbh
SCNpilot_expt_300_bf_scaffold_609_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6817..7473)
DNA (657bp) protein (219aa)
Phosphopantetheinyl transferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUA4_9GAMM
Phosphopantetheinyl transferase {ECO:0000313|EMBL:EIL90795.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodano
phosphopantetheinyl transferase
SCNpilot_expt_300_bf_scaffold_609_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7521..8978)
DNA (1458bp) protein (486aa)
Glutamate synthase subunit beta {ECO:0000313|EMBL:EIL87979.1}; EC=1.4.1.13 {ECO:0000313|EMBL:EIL87979.1};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xantho
gltD; glutamate synthase (EC:1.4.1.13)
Glutamate synthase subunit beta n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL88_9GAMM rbh
SCNpilot_expt_300_bf_scaffold_609_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9001..11136)
DNA (2136bp) protein (712aa)
aspB; glutamate synthase [NADPH] large chain (EC:1.4.1.13)
Glutamate synthase, large subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUA1_9GAMM
Glutamate synthase, large subunit {ECO:0000313|EMBL:EIL90792.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhoda
SCNpilot_expt_300_bf_scaffold_609_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11120..13639)
DNA (2520bp) protein (840aa)
Glutamate synthase, large subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUA1_9GAMM
Glutamate synthase, large subunit {ECO:0000313|EMBL:EIL90792.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhoda
glutamine amidotransferases class-II family protein
SCNpilot_expt_300_bf_scaffold_609_10
R_Pseudomonadales_64_12, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13759..14895
DNA (1137bp) protein (379aa)
Uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_Pseudomonadales_64_12_curated
SCNpilot_expt_300_bf_scaffold_609_11
unknown

Not on your lists

comp(15022..15483)
DNA (462bp) protein (154aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_609_12
unknown

Not on your lists

comp(16024..16290)
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_609_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16746..17213
DNA (468bp) protein (156aa)
Na+/proline symporter n=1 Tax=Rhodanobacter denitrificans RepID=M4NA06_9GAMM
Na+/proline symporter
Na+/proline symporter {ECO:0000313|EMBL:AGG87200.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source=
SCNpilot_expt_300_bf_scaffold_609_14
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17250..17807)
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B36274
Uncharacterized protein {ECO:0000313|EMBL:KFN43024.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryzite
hypothetical protein
SCNpilot_expt_300_bf_scaffold_609_15
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17846..18514)
DNA (669bp) protein (223aa)
LuxR family two component transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WUJ7_9GAMM
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
SCNpilot_expt_300_bf_scaffold_609_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18603..20543)
DNA (1941bp) protein (647aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-R
acetyl-coenzyme A synthetase (EC:6.2.1.1)
Acetyl-coenzyme A synthetase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBU8_9GAMM rbh
SCNpilot_expt_300_bf_scaffold_609_17
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20765..22072
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NCQ4_9GAMM
hypothetical protein Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
hypothetical protein
SCNpilot_expt_300_bf_scaffold_609_18
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22230..23900
DNA (1671bp) protein (557aa)
Sugar transport protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL83_9GAMM rbh
Sugar transport protein {ECO:0000313|EMBL:EIL87974.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter f
arabinose efflux permease family protein
SCNpilot_expt_300_bf_scaffold_609_19
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23971..24231)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL82_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87973.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter f
Transglycosylase associated protein
SCNpilot_expt_300_bf_scaffold_609_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24370..25488
DNA (1119bp) protein (373aa)
DNA repair photolyase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU93_9GAMM rbh
DNA repair photolyase {ECO:0000313|EMBL:EIL90784.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spa
DNA repair photolyase
SCNpilot_expt_300_bf_scaffold_609_21
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25591..25770
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL67_9GAMM
hypothetical protein Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
hypothetical protein
SCNpilot_expt_300_bf_scaffold_609_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25819..27876)
DNA (2058bp) protein (686aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU88_9GAMM rbh
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:EIL90779.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.
dipeptidyl aminopeptidase/acylaminoacyl peptidase
SCNpilot_expt_300_bf_scaffold_609_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28075..29091)
DNA (1017bp) protein (339aa)
Fructose-1,6-bisphosphatase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; Short=FBPase class 1 {ECO:0000256|HAMAP-Rule:MF_01855};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01855};; D-fructose-1,6-bisphosph
fructose-1,6-bisphosphatase (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 1 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU86_9GAMM rbh
SCNpilot_expt_300_bf_scaffold_609_24
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29322..29930
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU85_9GAMM rbh
transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
SCNpilot_expt_300_bf_scaffold_609_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29941..30168
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU84_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90775.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
hypothetical protein
SCNpilot_expt_300_bf_scaffold_609_26
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30204..30833
DNA (630bp) protein (210aa)
Glutathione S-transferase domain-containing protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL55_9GAMM rbh
glutathione S-transferase Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
glutathione S-transferase
SCNpilot_expt_300_bf_scaffold_609_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30929..31633
DNA (705bp) protein (235aa)
Putative transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=M4NCR5_9GAMM rbh
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AGG87218.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobact
SCNpilot_expt_300_bf_scaffold_609_28
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31736..33550
DNA (1815bp) protein (605aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU80_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL90771.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
hypothetical protein
SCNpilot_expt_300_bf_scaffold_609_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33630..34034
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NA19_9GAMM
Protein of unknown function (DUF2384)
Uncharacterized protein {ECO:0000313|EMBL:AGG87220.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter de
SCNpilot_expt_300_bf_scaffold_609_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34181..34915
DNA (735bp) protein (245aa)
RES domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NHB2_9GAMM rbh
RES domain-containing protein
RES domain-containing protein {ECO:0000313|EMBL:AGG87221.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;"
Displaying items 1-30 of 36 in total

View Taxonomy