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SCNpilot_expt_300_bf_scaffold_536

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_536_1
unknown

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2..127
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_536_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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156..1109
DNA (954bp) protein (318aa)
Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CW47_VARPS
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACS16745.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovo
SCNpilot_expt_300_bf_scaffold_536_3
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1186..2862
DNA (1677bp) protein (559aa)
Tannase and feruloyl esterase (EC:3.1.1.73)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI00037013A2 rbh
Tannase Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
SCNpilot_expt_300_bf_scaffold_536_4
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2917..3468)
DNA (552bp) protein (184aa)
LuxR family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003801470
LuxR family transcriptional regulator {ECO:0000313|EMBL:GAD24957.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovo
LuxR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_536_5
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3586..4290
DNA (705bp) protein (235aa)
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5)
3-oxoacid CoA-transferase, A subunit {ECO:0000313|EMBL:AEF89595.1}; EC=2.8.3.5 {ECO:0000313|EMBL:AEF89595.1};; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Coma
3-oxoacid CoA-transferase, A subunit n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6B1W5_DELSC
SCNpilot_expt_300_bf_scaffold_536_6
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4292..4936
DNA (645bp) protein (215aa)
3-oxoacid CoA-transferase subunit B; K01029 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
3-oxoacid CoA-transferase, B subunit n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WVM0_COMTE
succinyl-CoA:3-ketoacid-CoA transferase
SCNpilot_expt_300_bf_scaffold_536_7
Acinetobacter gerneri, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5084..6415
DNA (1332bp) protein (444aa)
Uncharacterized protein n=2 Tax=Acinetobacter gerneri RepID=N8ZHH9_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:ENV33209.1}; TaxID=1120926 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter gern
Rieske (2Fe-2S) iron-sulfur domain-containing protein
SCNpilot_expt_300_bf_scaffold_536_8
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6993..7700
DNA (708bp) protein (236aa)
fahA; fumarylacetoacetase (EC:3.7.1.2)
Fumarylacetoacetase {ECO:0000313|EMBL:CAP44365.1}; EC=3.7.1.2 {ECO:0000313|EMBL:CAP44365.1};; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Borde
Fumarylacetoacetase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I718_BORPD
SCNpilot_expt_300_bf_scaffold_536_9
Rhodococcus erythropolis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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7724..8701
DNA (978bp) protein (326aa)
qor; probable NADPH--quinone reductase (EC:1.6.5.5)
quinone oxidoreductase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEF2F
Quinone oxidoreductase {ECO:0000313|EMBL:EQM33162.1}; TaxID=1381122 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus erythropolis DN1.;"
SCNpilot_expt_300_bf_scaffold_536_10
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

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8749..9750
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0IFT0_9BURK
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
hypothetical protein
SCNpilot_expt_300_bf_scaffold_536_11
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9800..10837
DNA (1038bp) protein (346aa)
Outer membrane porin protein n=1 Tax=Janthinobacterium sp. HH01 RepID=L9P929_9BURK
Outer membrane porin protein {ECO:0000313|EMBL:ELX07982.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthin
gram-negative type outer membrane porin protein
SCNpilot_expt_300_bf_scaffold_536_12
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10834..11532)
DNA (699bp) protein (233aa)
Crp/FNR family transcriptional regulator n=1 Tax=Cupriavidus basilensis OR16 RepID=H1SA73_9BURK
Crp/FNR family transcriptional regulator {ECO:0000313|EMBL:EHP40622.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="C
Crp family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_536_13
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11693..12112
DNA (420bp) protein (140aa)
glyoxalase n=1 Tax=Hoeflea sp. 108 RepID=UPI00035E8243
Uncharacterized protein {ECO:0000313|EMBL:CDX60177.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium pluri
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_300_bf_scaffold_536_14
Bordetella holmesii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12234..13196
DNA (963bp) protein (321aa)
Uncharacterized protein n=2 Tax=Bordetella holmesii RepID=M5NLH9_9BORD
tripartite tricarboxylate transporter receptor family protein
Tripartite tricarboxylate transporter family receptor {ECO:0000313|EMBL:KAK83253.1}; TaxID=1331212 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;"
SCNpilot_expt_300_bf_scaffold_536_15
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13298..14182
DNA (885bp) protein (295aa)
Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJL1_XANP2
PAS/PAC sensor-containing diguanylate cyclase
Diguanylate cyclase with PAS/PAC sensor {ECO:0000313|EMBL:ABS68204.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanth
SCNpilot_expt_300_bf_scaffold_536_16
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

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14212..14745
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A9AD2
hypothetical protein Tax=RBG_13_Planctomycetes_62_9_curated
hypothetical protein
SCNpilot_expt_300_bf_scaffold_536_17
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14778..14948
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQM6_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:CDP53187.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_536_18
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15108..16271
DNA (1164bp) protein (388aa)
hypothetical protein n=1 Tax=Spongiibacter tropicus RepID=UPI0003B308CA
FOG: GGDEF domain {ECO:0000313|EMBL:CDP51917.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
diguanylate cyclase
SCNpilot_expt_300_bf_scaffold_536_19
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16381..18486
DNA (2106bp) protein (702aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Burkholderia sp. SJ98 RepID=K8R7N7_9BURK rbh
Diguanylate phosphodiesterase {ECO:0000313|EMBL:KAK45700.1}; TaxID=1458357 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderi
diguanylate cyclase/phosphodiesterase
SCNpilot_expt_300_bf_scaffold_536_20
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18442..19188)
DNA (747bp) protein (249aa)
DNA-binding transcriptional activator MhpR; K05818 IclR family transcriptional regulator, mhp operon transcriptional activator id=5083630 bin=GWF1_Burkholderiales_GWF1_66_17 species=Comamonas testosteroni genus=Comamonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
DNA-binding transcriptional activator MhpR; K05818 IclR family transcriptional regulator, mhp operon transcriptional activator Tax=GWE1_Burkholderiales_65_30_curated
DNA-binding transcriptional activator MhpR
SCNpilot_expt_300_bf_scaffold_536_21
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19304..20290
DNA (987bp) protein (329aa)
Putative uncharacterized protein id=1275412 bin=GWE1_Burkholderiales_65_30 species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
putative Bug-like extracytoplasmic solute binding receptor, TTT family Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
SCNpilot_expt_300_bf_scaffold_536_22
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20309..22066
DNA (1758bp) protein (586aa)
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase id=1275411 bin=GWE1_Burkholderiales_65_30 species=Pseudomonas putida genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
monooxygenase, FAD-binding:FAD dependent oxidoreductase Tax=GWE1_Burkholderiales_65_30_curated
2,4-dichlorophenol 6-monooxygenase
SCNpilot_expt_300_bf_scaffold_536_23
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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22066..23061
DNA (996bp) protein (332aa)
mhpB; 3-(2,3-dihydroxyphenyl)propionate dioxygenase (EC:1.13.11.16); K05713 2,3-dihydroxyphenylpropionate 1,2-dioxygenase [EC:1.13.11.16] id=5083633 bin=GWF1_Burkholderiales_GWF1_66_17 species=Comamonas testosteroni genus=Comamonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
mhpB; 3-(2,3-dihydroxyphenyl)propionate dioxygenase (EC:1.13.11.16); K05713 2,3-dihydroxyphenylpropionate 1,2-dioxygenase [EC:1.13.11.16] Tax=GWE1_Burkholderiales_65_30_curated
mhpB; 3-(2,3-dihydroxyphenyl)propionate dioxygenase
SCNpilot_expt_300_bf_scaffold_536_24
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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23064..23933
DNA (870bp) protein (290aa)
2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase {ECO:0000256|HAMAP-Rule:MF_01654}; EC=3.7.1.14 {ECO:0000256|HAMAP-Rule:MF_01654};; 2-hydroxy-6-ketonona-2,4-diene-1,9-dioic aci
2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase n=3 Tax=Azotobacter vinelandii RepID=C1DRI5_AZOVD rbh
mphC; 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase
SCNpilot_expt_300_bf_scaffold_536_25
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24023..24574)
DNA (552bp) protein (184aa)
Putative isochorismatase n=2 Tax=Bordetella bronchiseptica RepID=Q7WNF9_BORBR rbh
Putative N-acetyltransferase YedL {ECO:0000313|EMBL:KCV66009.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella
isochorismatase
SCNpilot_expt_300_bf_scaffold_536_26
Deinococcus maricopensis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(24711..26477)
DNA (1767bp) protein (589aa)
TAP domain protein n=1 Tax=Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) RepID=E8UA72_DEIML
TAP domain-containing protein
TAP domain protein {ECO:0000313|EMBL:ADV67961.1}; TaxID=709986 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus maricopensis (strai
SCNpilot_expt_300_bf_scaffold_536_27
Burkholderia sp. RPE67, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(26604..26858)
DNA (255bp) protein (85aa)
Transglycosylase-associated protein n=1 Tax=Burkholderia sp. YI23 RepID=G8MBR6_9BURK
transglycosylase-associated protein
Transglycosylase-associated protein {ECO:0000313|EMBL:BAO89248.1}; TaxID=758796 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkho
SCNpilot_expt_300_bf_scaffold_536_28
unknown

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comp(26958..27242)
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_536_29
unknown

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comp(27352..27552)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_536_30
unknown

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27716..28075
DNA (360bp) protein (120aa)

This feature has no annotations

Displaying items 1-30 of 91 in total

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