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SCNpilot_expt_300_bf_scaffold_3563

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_3563_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..831)
DNA (831bp) protein (277aa)
Phosphonate ABC transporter, substrate binding protein n=2 Tax=Agrobacterium RepID=F0L490_AGRSH rbh
Phosphonate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KDR86945.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobact
phnD; phosphonate ABC transporter substrate-binding protein
SCNpilot_expt_300_bf_scaffold_3563_2
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(899..1732)
DNA (834bp) protein (278aa)
Phosphonates import ATP-binding protein PhnC {ECO:0000256|HAMAP-Rule:MF_01713}; EC=3.6.3.28 {ECO:0000256|HAMAP-Rule:MF_01713};; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhi
Phosphonate ABC transporter, ATP-binding protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VUQ0_9RHIZ
phoC; phosphate uptake ABC transporter ATP-binding protein
SCNpilot_expt_300_bf_scaffold_3563_3
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1827..2366)
DNA (540bp) protein (180aa)
Ribose 1,5-bisphosphate phosphokinase PhnN {ECO:0000256|HAMAP-Rule:MF_00836}; EC=2.7.4.23 {ECO:0000256|HAMAP-Rule:MF_00836};; Ribose 1,5-bisphosphokinase {ECO:0000256|HAMAP-Rule:MF_00836}; TaxID=12889
Ribose 1,5-bisphosphate phosphokinase PhnN n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9S2F5_9RHOB
putative Guanylate kinase Gmk
SCNpilot_expt_300_bf_scaffold_3563_4
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2555..4921
DNA (2367bp) protein (789aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(S) n=1 Tax=Afipia sp. 1NLS2 RepID=D6V332_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KKB76472.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
diguanylate cyclase/phosphodiesterase
SCNpilot_expt_300_bf_scaffold_3563_5
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4942..5700)
DNA (759bp) protein (253aa)
cobM; precorrin-4 C11-methyltransferase CobM (EC:2.1.1.133)
Precorrin-4 C11-methyltransferase CobM n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3M907_RHISN rbh
Precorrin-4 C11-methyltransferase {ECO:0000313|EMBL:KKB10212.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhat
SCNpilot_expt_300_bf_scaffold_3563_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5697..6908)
DNA (1212bp) protein (404aa)
precorrin-6y C5,15-methyltransferase subunit CbiE (EC:2.1.1.132)
Precorrin-6Y C(5,15)-methyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXI8_9RHIZ rbh
Precorrin-6Y methyltransferase {ECO:0000313|EMBL:KKB08972.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatens
SCNpilot_expt_300_bf_scaffold_3563_7
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6905..7399)
DNA (495bp) protein (165aa)
Precorrin-3B C17-methyltransferase {ECO:0000313|EMBL:KKB08973.1}; EC=2.1.1.131 {ECO:0000313|EMBL:KKB08973.1};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomi
precorrin-3B C(17)-methyltransferase (EC:2.1.1.131)
Precorrin-3B C(17)-methyltransferase CobJ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1V8_9RHIZ
SCNpilot_expt_300_bf_scaffold_3563_8
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7584..8309)
DNA (726bp) protein (242aa)
Precorrin-2 C20-methyltransferase {ECO:0000313|EMBL:KKB08974.1}; EC=2.1.1.130 {ECO:0000313|EMBL:KKB08974.1};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomic
Precorrin-2 C20-methyltransferase n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HAH5_9RHIZ rbh
precorrin-2 C20-methyltransferase
SCNpilot_expt_300_bf_scaffold_3563_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8306..8938)
DNA (633bp) protein (211aa)
Precorrin-8X methylmutase {ECO:0000313|EMBL:KKB08975.1}; EC=5.4.99.61 {ECO:0000313|EMBL:KKB08975.1};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiacea
cobH; precorrin-8X methylmutase (EC:5.4.1.2)
Precorrin-8X methylmutase CobH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHG3_9RHIZ rbh
SCNpilot_expt_300_bf_scaffold_3563_10
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8935..10116)
DNA (1182bp) protein (394aa)
Precorrin-3B synthase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A4K2_STAND
Uncharacterized protein {ECO:0000313|EMBL:KKB08976.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
precorrin-3B synthase
SCNpilot_expt_300_bf_scaffold_3563_11
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10171..10833)
DNA (663bp) protein (221aa)
cobF; precorrin-6A synthase (EC:2.1.1.152)
Precorrin-6A synthase (Deacetylating) n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z381_9SPHN
Precorrin 6A synthase {ECO:0000313|EMBL:KKB08977.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_300_bf_scaffold_3563_12
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10969..11331
DNA (363bp) protein (121aa)
Signal peptide protein {ECO:0000313|EMBL:KKB75771.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
Putative uncharacterized protein id=2708716 bin=GWF1_Rhodobacteraceae_65_7 species=Maritimibacter alkaliphilus genus=Maritimibacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
hypothetical protein
SCNpilot_expt_300_bf_scaffold_3563_13
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11367..11567)
DNA (201bp) protein (67aa)
Heavy metal transport/detoxification protein n=1 Tax=Rhizobium lupini HPC(L) RepID=K5DLZ1_RHILU
Heavy metal transporter {ECO:0000313|EMBL:KKB76466.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
Heavy metal transport/detoxification protein
SCNpilot_expt_300_bf_scaffold_3563_14
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11569..11976)
DNA (408bp) protein (136aa)
MerR family transcriptional regulator n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U7R3_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:KKB84556.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
cueR; DNA-binding transcriptional activator of copper-responsive regulon genes
SCNpilot_expt_300_bf_scaffold_3563_15
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11973..13412)
DNA (1440bp) protein (480aa)
PREDICTED: copper-transporting ATPase RAN1-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1746B
Lead, cadmium, zinc and mercury transporting ATPase, copper-translocating P-type ATPase {ECO:0000313|EMBL:KFC71346.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales
Heavy metal translocating P-type ATPase
SCNpilot_expt_300_bf_scaffold_3563_16
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13372..14175)
DNA (804bp) protein (268aa)
Lead, cadmium, zinc and mercury transporting ATPase, copper-translocating P-type ATPase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REK2_PELHB
ATPase {ECO:0000313|EMBL:KKB76464.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
lead, cadmium, zinc and mercury transporting ATPase, copper-translocating P-type ATPase
SCNpilot_expt_300_bf_scaffold_3563_17
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14403..15125
DNA (723bp) protein (241aa)
UPI0003CFDDEA related cluster n=1 Tax=unknown RepID=UPI0003CFDDEA rbh
Transcriptional regulator {ECO:0000313|EMBL:KKB08991.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hlyX; Regulatory protein hlyX
SCNpilot_expt_300_bf_scaffold_3563_18
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15150..16046)
DNA (897bp) protein (299aa)
Transport ATP-binding protein CydC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7L5_PELHB
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB86571.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi
transport ATP-binding protein CydC
SCNpilot_expt_300_bf_scaffold_3563_19
unknown

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16521..16766
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_3563_20
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16726..18447)
DNA (1722bp) protein (574aa)
ABC transporter CydDC cysteine exporter family permease/ATP-binding protein CydD n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7SYH4_ALCXX rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB08994.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinh
ABC transporter ATP-binding protein
SCNpilot_expt_300_bf_scaffold_3563_21
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18654..19583
DNA (930bp) protein (310aa)
Cytochrome d ubiquinol oxidase subunit I n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7L2_PELHB
Cytochrome d terminal oxidase subunit 1 {ECO:0000313|EMBL:KKB08993.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia c
cytochrome d ubiquinol oxidase subunit I
Displaying 21 items

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