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SCNpilot_expt_300_bf_scaffold_946

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_946_1
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1181)
DNA (1179bp) protein (393aa)
GGDEF family protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U7A3_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:KKB76548.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
Diguanylate cyclase (GGDEF) domain-containing protein
SCNpilot_expt_300_bf_scaffold_946_2
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1286..2767)
DNA (1482bp) protein (494aa)
Drug resistance transporter EmrB/QacA subfamily n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFA4_PELHB rbh
Major facilitator transporter {ECO:0000313|EMBL:KKB08826.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensi
EmrB/QacA subfamily drug resistance transporter
SCNpilot_expt_300_bf_scaffold_946_3
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3137..4285
DNA (1149bp) protein (383aa)
Radical SAM domain protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB62_PELHB rbh
DNA repair photolyase {ECO:0000313|EMBL:KKB76550.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
radical SAM domain protein
SCNpilot_expt_300_bf_scaffold_946_4
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4334..4915)
DNA (582bp) protein (194aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB08825.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_300_bf_scaffold_946_5
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4995..5360
DNA (366bp) protein (122aa)
Alpha/beta hydrolase n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UAF4_ADVKW
Uncharacterized protein {ECO:0000313|EMBL:KKB10191.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
alpha/beta hydrolase
SCNpilot_expt_300_bf_scaffold_946_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5360..6046
DNA (687bp) protein (229aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SA
Ribonuclease HII n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB59_PELHB
ribonuclease HII
SCNpilot_expt_300_bf_scaffold_946_7
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6129..7265
DNA (1137bp) protein (379aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Dev
Modification methylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB58_PELHB rbh
modification methylase
SCNpilot_expt_300_bf_scaffold_946_8
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7349..7912)
DNA (564bp) protein (188aa)
GCN5-related N-acetyltransferase n=1 Tax=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) RepID=B9KVJ9_RHOSK
GCN5-related N-acetyltransferase
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ACM04077.1}; TaxID=557760 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobact
SCNpilot_expt_300_bf_scaffold_946_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7948..9003)
DNA (1056bp) protein (352aa)
A/G-specific adenine glycosylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB57_PELHB rbh
Adenine glycosylase {ECO:0000313|EMBL:KKB08823.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
A/G-specific adenine glycosylase
SCNpilot_expt_300_bf_scaffold_946_10
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9102..9575
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB56_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB76556.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_946_11
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9665..10465
DNA (801bp) protein (267aa)
Periplasmic thiol:disulfide interchange protein DsbA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB55_PELHB
Periplasmic thiol:disulfide interchange protein DsbA {ECO:0000313|EMBL:KFC67334.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" sou
periplasmic thiol:disulfide interchange protein DsbA
SCNpilot_expt_300_bf_scaffold_946_12
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10598..14053
DNA (3456bp) protein (1152aa)
Chromosome partition protein Smc n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB54_PELHB rbh
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chin
chromosome partition protein smc
SCNpilot_expt_300_bf_scaffold_946_13
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14160..14348)
DNA (189bp) protein (63aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB08794.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_300_bf_scaffold_946_14
unknown

Not on your lists

comp(14436..14822)
DNA (387bp) protein (129aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_946_15
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15109..15504
DNA (396bp) protein (132aa)
ATP synthase protein I2 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB52_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB84132.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
ATP synthase protein I2
SCNpilot_expt_300_bf_scaffold_946_16
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15523..16302
DNA (780bp) protein (260aa)
ATP synthase subunit a n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB51_PELHB rbh
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:
ATP synthase subunit A
SCNpilot_expt_300_bf_scaffold_946_17
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16360..16587
DNA (228bp) protein (76aa)
ATP F0F1 synthase subunit C {ECO:0000313|EMBL:KKB84131.1}; EC=3.6.3.14 {ECO:0000313|EMBL:KKB84131.1};; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiac
ATP synthase C chain n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB50_PELHB
ATP synthase subunit C
SCNpilot_expt_300_bf_scaffold_946_18
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16739..17272
DNA (534bp) protein (178aa)
ATP synthase subunit b n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB49_PELHB
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subuni
ATP synthase subunit B'
SCNpilot_expt_300_bf_scaffold_946_19
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17278..17766
DNA (489bp) protein (163aa)
ATP synthase subunit b n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB48_PELHB
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subuni
ATP synthase subunit B
SCNpilot_expt_300_bf_scaffold_946_20
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18276..19463
DNA (1188bp) protein (396aa)
Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|RuleBase:RU003981};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiacea
Aminomethyltransferase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T017_CAUSK rbh
glycine cleavage system T protein
SCNpilot_expt_300_bf_scaffold_946_21
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19473..19838
DNA (366bp) protein (122aa)
Glycine cleavage system H protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB43_PELHB
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia ribo
glycine cleavage system H protein
SCNpilot_expt_300_bf_scaffold_946_22
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19851..21194
DNA (1344bp) protein (448aa)
Probable glycine dehydrogenase (decarboxylating) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00015358}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00022796}
Probable glycine dehydrogenase [decarboxylating] subunit 1 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB44_PELHB rbh
glycine dehydrogenase (decarboxylating) (glycine cleavage system P1 protein)
SCNpilot_expt_300_bf_scaffold_946_23
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21191..22735
DNA (1545bp) protein (515aa)
Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|SAAS:SAAS00022796}; EC=1.4.4.2 {ECO:0000256|SAAS:SAAS00022796};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhiz
Glycine dehydrogenase (Decarboxylating) (Glycine cleavage system P2 protein) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB45_PELHB rbh
glycine dehydrogenase (decarboxylating) (glycine cleavage system P2 protein)
SCNpilot_expt_300_bf_scaffold_946_24
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22786..23370)
DNA (585bp) protein (195aa)
Lipoprotein, hypothetical n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB41_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB08785.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
lipoprotein
SCNpilot_expt_300_bf_scaffold_946_25
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23416..23808)
DNA (393bp) protein (131aa)
Putative alkyl hydroperoxide reductase, putative member of the AhpC/TSA-family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB40_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB84769.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
putative alkyl hydroperoxide reductase member of the AhpC/TSA-family protein
SCNpilot_expt_300_bf_scaffold_946_26
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23907..24740)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB39_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB84122.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
hypothetical protein
SCNpilot_expt_300_bf_scaffold_946_27
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24802..25446
DNA (645bp) protein (215aa)
UPF0301 protein KKY_506 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB38_PELHB
UPF0301 protein VE26_01535 {ECO:0000256|HAMAP-Rule:MF_00758}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatens
hypothetical protein
SCNpilot_expt_300_bf_scaffold_946_28
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25474..27168)
DNA (1695bp) protein (565aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB37_PELHB
Diguanylate cyclase {ECO:0000313|EMBL:KKB08781.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
SCNpilot_expt_300_bf_scaffold_946_29
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27144..28313)
DNA (1170bp) protein (390aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB37_PELHB
Diguanylate cyclase {ECO:0000313|EMBL:KFL28155.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
SCNpilot_expt_300_bf_scaffold_946_30
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28494..28769)
DNA (276bp) protein (92aa)
Ribosomal-protein-S5p-alanine acetyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB36_PELHB
GCN5 family acetyltransferase {ECO:0000313|EMBL:KKB08780.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensi
ribosomal-protein-S5p-alanine acetyltransferase
Displaying 30 items

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