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SCNPILOT_EXPT_300_BF_Rhizobiales_67_5

SCNPILOT_EXPT_300_BF_Bosea_sp__LC85_67_4
In projects: SCNPILOT_EXPT_300_BF

Consensus taxonomy: Bosea sp. LC85  →  Bosea  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Description

from comparison: SCNPILOT_EXPT_750_BF_Rhizobiales_65_15

Displaying items 351-400 of 431 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_300_bf_scaffold_17168
Species: Bradyrhizobium sp. STM 3843 (50%)
2 1588 bp 67.76 4.11 92.38
SCNpilot_expt_300_bf_scaffold_15917
Species: Bosea sp. LC85 (100%)
2 1663 bp 68.79 2.72 95.97
SCNpilot_expt_300_bf_scaffold_25368
Species: Methylobacterium aquaticum (50%)
2 1205 bp 68.55 5.83 96.60
SCNpilot_expt_300_bf_scaffold_27953
Species: Methylobacterium sp. 4-46 (50%)
2 1087 bp 66.97 5.08 67.62
SCNpilot_expt_300_bf_scaffold_20973
Species: Bosea sp. LC85 (50%)
2 1391 bp 64.13 6.14 98.56
SCNpilot_expt_300_bf_scaffold_28519
Species: Bosea sp. LC85 (100%)
2 1064 bp 67.67 2.83 98.68
SCNpilot_expt_300_bf_scaffold_38858
Species: Bosea sp. LC85 (100%)
2 1406 bp 69.20 5.00 73.83
SCNpilot_expt_300_bf_scaffold_24282
Species: Bosea sp. LC85 (100%)
2 1251 bp 66.19 4.41 86.81
SCNpilot_expt_300_bf_scaffold_9815
Species: Afipia felis (50%)
2 2219 bp 70.71 4.98 99.77
SCNpilot_expt_300_bf_scaffold_15163
Species: Microvirga lotononidis (50%)
2 1713 bp 68.77 3.52 99.30
SCNpilot_expt_300_bf_scaffold_26536
Species: Bosea sp. LC85 (100%)
2 1153 bp 66.70 3.70 100.69
SCNpilot_expt_300_bf_scaffold_15421
Species: Bosea sp. LC85 (100%)
2 1696 bp 69.58 4.59 99.94
SCNpilot_expt_300_bf_scaffold_36582
Species: Bosea sp. LC85 (100%)
2 1492 bp 59.18 4.54 85.86
SCNpilot_expt_300_bf_scaffold_24030
Species: Bosea sp. LC85 (100%)
2 1262 bp 72.03 3.98 100.08
SCNpilot_expt_300_bf_scaffold_22080
Species: Oligotropha carboxidovorans (100%)
2 1342 bp 57.82 3.93 97.47
SCNpilot_expt_300_bf_scaffold_14616
Species: Bosea sp. LC85 (100%)
2 1754 bp 67.84 4.44 88.08
SCNpilot_expt_300_bf_scaffold_28784
Species: Mesorhizobium sp. LSJC280B00 (50%)
2 1054 bp 68.98 4.52 96.20
SCNpilot_expt_300_bf_scaffold_19672
Species: Bosea sp. LC85 (50%)
2 1455 bp 69.69 8.45 84.74
SCNpilot_expt_300_bf_scaffold_21041
Species: Rhizobium sp. YS-1r (50%)
2 1388 bp 67.51 5.06 100.07
SCNpilot_expt_300_bf_scaffold_22084
Species: Methylobacterium nodulans (50%)
2 1341 bp 68.98 3.56 98.88
SCNpilot_expt_300_bf_scaffold_22341
Species: Agrobacterium vitis (50%)
2 1331 bp 66.42 3.96 83.62
SCNpilot_expt_300_bf_scaffold_23485
Species: Bradyrhizobium sp. WSM1253 (50%)
2 1283 bp 66.87 3.52 99.38
SCNpilot_expt_300_bf_scaffold_27974
Species: Rhizobium etli (50%)
2 1087 bp 68.72 4.39 93.56
SCNpilot_expt_300_bf_scaffold_21815
Species: Bosea sp. LC85 (50%)
2 1353 bp 67.33 4.82 98.23
SCNpilot_expt_300_bf_scaffold_19423
Species: Acidocella aminolytica (50%)
2 1470 bp 66.80 4.10 93.47
SCNpilot_expt_300_bf_scaffold_22858
Species: Ensifer adhaerens (50%)
2 1309 bp 70.51 4.60 86.86
SCNpilot_expt_300_bf_scaffold_14882
Species: Bosea sp. LC85 (100%)
2 3168 bp 66.35 4.28 88.45
SCNpilot_expt_300_bf_scaffold_28026
Species: Bosea sp. LC85 (100%)
2 1085 bp 71.34 6.01 99.26
SCNpilot_expt_300_bf_scaffold_15450
Species: uncultured bacterium (100%)
1 1694 bp 57.73 3.11 99.88
SCNpilot_expt_300_bf_scaffold_26823
Species: Bosea sp. LC85 (100%)
1 1140 bp 67.89 4.62 72.11
SCNpilot_expt_300_bf_scaffold_29435
Species: Rhizobium sp. YS-1r (100%)
1 1028 bp 66.15 4.15 99.81
SCNpilot_expt_300_bf_scaffold_24060
Species: Nitratireductor indicus (100%)
1 1261 bp 71.85 3.38 99.68
SCNpilot_expt_300_bf_scaffold_19444
Species: Bosea sp. LC85 (100%)
1 1469 bp 69.91 2.90 99.25
SCNpilot_expt_300_bf_scaffold_17477
Species: Bosea sp. LC85 (100%)
1 1570 bp 69.30 5.44 99.94
SCNpilot_expt_300_bf_scaffold_30024
Species: Devosia insulae (100%)
1 1003 bp 64.81 3.50 20.94
SCNpilot_expt_300_bf_scaffold_27493
Species: Bosea sp. LC85 (100%)
1 1109 bp 69.61 2.72 86.02
SCNpilot_expt_300_bf_scaffold_18216
Species: Bosea sp. LC85 (100%)
1 1529 bp 69.78 4.43 85.35
SCNpilot_expt_300_bf_scaffold_21599
Species: Bosea sp. LC85 (100%)
1 1363 bp 71.02 4.79 96.18
SCNpilot_expt_300_bf_scaffold_17752
Species: Bosea sp. LC85 (100%)
1 1555 bp 70.61 5.00 84.69
SCNpilot_expt_300_bf_scaffold_29202
Species: Bosea sp. LC85 (100%)
1 1037 bp 66.54 5.08 99.81
SCNpilot_expt_300_bf_scaffold_20267
Species: Bradyrhizobium japonicum (100%)
1 1425 bp 70.25 4.23 100.00
SCNpilot_expt_300_bf_scaffold_25435
Species: Bosea sp. LC85 (100%)
1 1201 bp 68.03 4.81 99.92
SCNpilot_expt_300_bf_scaffold_25437
Species: Bosea sp. LC85 (100%)
1 1201 bp 69.36 3.55 99.92
SCNpilot_expt_300_bf_scaffold_20017
Species: Bradyrhizobium sp. S23321 (100%)
1 1438 bp 71.21 4.71 99.93
SCNpilot_expt_300_bf_scaffold_19732
Species: Sphingobium herbicidovorans (100%)
1 1452 bp 64.67 4.84 88.02
SCNpilot_expt_300_bf_scaffold_29217
Species: Bosea sp. LC85 (100%)
1 1036 bp 68.15 4.60 99.90
SCNpilot_expt_300_bf_scaffold_28609
Species: Bosea sp. LC85 (100%)
1 1061 bp 65.41 6.15 77.76
SCNpilot_expt_300_bf_scaffold_19763
Species: Magnetospirillum gryphiswaldense (100%)
1 1450 bp 66.28 3.29 94.97
SCNpilot_expt_300_bf_scaffold_15005
Species: Bosea sp. LC85 (100%)
1 1725 bp 66.61 3.78 99.13
SCNpilot_expt_300_bf_scaffold_25735
Species: Bosea sp. LC85 (100%)
1 1189 bp 71.99 3.59 94.87
Displaying items 351-400 of 431 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.