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SCNpilot_expt_300_bf_scaffold_18

Search features with annotation key words

Displaying items 1-30 of 414 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_18_1
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..131)
DNA (129bp) protein (43aa)
Transaldolase {ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|SAAS:SAAS00118670};; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Steno
Transaldolase n=2 Tax=Xanthomonas fuscans subsp. aurantifolii RepID=D4SVW4_9XANT
transaldolase
SCNpilot_expt_300_bf_scaffold_18_2
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(166..591)
DNA (426bp) protein (142aa)
nucleoside diphosphate kinase regulator n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002F8CD14
Transcription elongation factor
Regulator of nucleoside diphosphate kinase {ECO:0000313|EMBL:CEH88621.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source=
SCNpilot_expt_300_bf_scaffold_18_3
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(790..1695)
DNA (906bp) protein (302aa)
LysR family transcriptional regulator n=3 Tax=Xanthomonas RepID=UPI0003610AD2 rbh
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AJC45813.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacch
SCNpilot_expt_300_bf_scaffold_18_4
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1792..3384)
DNA (1593bp) protein (531aa)
Alkyl hydroperoxide reductase, F subunit n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVM0_PSEUU
alkyl hydroperoxide reductase subunit F
Alkyl hydroperoxide reductase, F subunit {ECO:0000313|EMBL:ADV28219.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" sou
SCNpilot_expt_300_bf_scaffold_18_5
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3557..4120)
DNA (564bp) protein (188aa)
Alkyl hydroperoxide reductase subunit C n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6STV3_JANMA rbh
ahpC; alkyl hydroperoxide reductase rbh
Alkyl hydroperoxide reductase subunit C {ECO:0000313|EMBL:ABR89709.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" sourc
SCNpilot_expt_300_bf_scaffold_18_6
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4425..5273
DNA (849bp) protein (283aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltra
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002D2641D rbh
protein-(glutamine-N5) methyltransferase, release factor-specific
SCNpilot_expt_300_bf_scaffold_18_7
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5519..5740
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7GEC0_XANCT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ELQ04260.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas trans
SCNpilot_expt_300_bf_scaffold_18_8
RBG_13_OP11_40_15_curated, Microgenomates, Bacteria

Not on your lists

comp(5856..6512)
DNA (657bp) protein (219aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5Y6E9_9BRAD
hypothetical protein Tax=RBG_13_OP11_40_15_curated
hypothetical protein
SCNpilot_expt_300_bf_scaffold_18_9
unknown

Not on your lists

comp(6614..7375)
DNA (762bp) protein (254aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_18_10
unknown

Not on your lists

comp(7490..8152)
DNA (663bp) protein (221aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_18_11
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8435..8809)
DNA (375bp) protein (125aa)
glutamate dehydrogenase (NADP(+)) (EC:1.4.1.4)
glutamate dehydrogenase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E1BCBF
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotropho
SCNpilot_expt_300_bf_scaffold_18_12
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9255..9671)
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B475E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA90997.1}; TaxID=765912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavicoccus mobi
SCNpilot_expt_300_bf_scaffold_18_13
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9722..9955)
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Xanthomonas sp. M97 RepID=UPI00039B2096
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CEH38986.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri
SCNpilot_expt_300_bf_scaffold_18_14
Xanthomonas sp. Nyagatare, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10592..10768
DNA (177bp) protein (59aa)
Transposase {ECO:0000313|EMBL:KGK56860.1}; TaxID=1552758 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sp. Nyagatare.;"
SCNpilot_expt_300_bf_scaffold_18_15
unknown

Not on your lists

comp(12629..12949)
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_18_16
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13243..14586)
DNA (1344bp) protein (448aa)
glutamate dehydrogenase (NADP(+)) (EC:1.4.1.4)
glutamate dehydrogenase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000308654F rbh
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxant
SCNpilot_expt_300_bf_scaffold_18_17
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14668..15729)
DNA (1062bp) protein (354aa)
leuB; 3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|H
3-isopropylmalate dehydrogenase n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FTR8_STRMK rbh
SCNpilot_expt_300_bf_scaffold_18_18
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15802..16380)
DNA (579bp) protein (193aa)
3-isopropylmalate dehydratase {ECO:0000256|SAAS:SAAS00089872}; EC=4.2.1.33 {ECO:0000256|SAAS:SAAS00089872};; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanth
3-isopropylmalate dehydratase, small subunit n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K204_STEMA rbh
3-isopropylmalate dehydratase small subunit
SCNpilot_expt_300_bf_scaffold_18_19
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16380..17798)
DNA (1419bp) protein (473aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM i
leuC; 3-isopropylmalate dehydratase large subunit LeuC (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L928_9GAMM rbh
SCNpilot_expt_300_bf_scaffold_18_20
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17837..19390)
DNA (1554bp) protein (518aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000
leuA; 2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031DCE22 rbh
SCNpilot_expt_300_bf_scaffold_18_21
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19387..20484)
DNA (1098bp) protein (366aa)
threonine dehydratase (EC:4.3.1.19)
Strain LMCP11 contig_18, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26595.1}; EC=4.3.1.19 {ECO:0000313|EMBL:KIQ26595.1};; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xant
Threonine dehydratase catabolic n=3 Tax=Xanthomonas campestris RepID=G0CF47_XANCA rbh
SCNpilot_expt_300_bf_scaffold_18_22
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20596..20853)
DNA (258bp) protein (86aa)
Acetolactate synthase isozyme II small subunit n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SI65_STRM5
Acetolactate synthase {ECO:0000313|EMBL:AHY57802.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomona
acetolactate synthase isozyme II small subunit
SCNpilot_expt_300_bf_scaffold_18_23
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20837..22564)
DNA (1728bp) protein (576aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=454957 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadace
acetolactate synthase n=1 Tax=Xanthomonas arboricola RepID=UPI0002FF0EF4 rbh
ilvG; acetolactate synthase 2 catalytic subunit
SCNpilot_expt_300_bf_scaffold_18_24
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22610..23584)
DNA (975bp) protein (325aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomerore
ketol-acid reductoisomerase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EF84F4 rbh
ketol-acid reductoisomerase
SCNpilot_expt_300_bf_scaffold_18_25
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24413..25231
DNA (819bp) protein (273aa)
Adenylate/guanylate cyclase family protein,putative transcriptional regulator n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8YY65_9GAMM
transcriptional activator domain protein
Transcriptional activator domain protein {ECO:0000313|EMBL:BAO30161.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulf
SCNpilot_expt_300_bf_scaffold_18_26
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25427..26764)
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Acidovorax avenae RepID=UPI00036D86C5
Uncharacterized protein {ECO:0000313|EMBL:EER60641.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii
hypothetical protein
SCNpilot_expt_300_bf_scaffold_18_27
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26761..27861)
DNA (1101bp) protein (367aa)
Putative membrane protein n=2 Tax=Bordetella bronchiseptica RepID=Q7WPA7_BORBR
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCN21551.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchis
SCNpilot_expt_300_bf_scaffold_18_28
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27858..31079)
DNA (3222bp) protein (1074aa)
Putative membrane protein n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QM64_BORBO
hypothetical protein
Putative N-acetyltransferase YedL {ECO:0000313|EMBL:KDD62302.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella
SCNpilot_expt_300_bf_scaffold_18_29
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31124..31876)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI0003774178
hypothetical protein
Prepilin-type cleavage/methylation N-terminal domain protein {ECO:0000313|EMBL:KCV60263.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordet
SCNpilot_expt_300_bf_scaffold_18_30
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31888..33144)
DNA (1257bp) protein (419aa)
Putative type II secretion system protein n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QFA6_BORBO rbh
type II secretion system protein
Type II secretion system protein F {ECO:0000313|EMBL:KCV63162.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella
Displaying items 1-30 of 414 in total

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