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SCNpilot_expt_300_bf_scaffold_85

Search features with annotation key words

Displaying items 1-30 of 151 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_85_1
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

139..444
DNA (306bp) protein (102aa)
Exonuclease n=1 Tax=Laribacter hongkongensis (strain HLHK9) RepID=C1D7P6_LARHH
exonuclease
Exonuclease {ECO:0000313|EMBL:AHX12911.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_expt_300_bf_scaffold_85_2
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

444..671
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K5L8_STEMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEM50760.1}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltop
SCNpilot_expt_300_bf_scaffold_85_3
Xanthomonas sp. Nyagatare, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

668..925
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI000318DFF1
Uncharacterized protein {ECO:0000313|EMBL:KGK59606.1}; TaxID=1552758 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sp. N
SCNpilot_expt_300_bf_scaffold_85_4
unknown

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922..1635
DNA (714bp) protein (238aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_85_5
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1622..2530
DNA (909bp) protein (303aa)
putative C-5 cytosine-specific DNA methylase (EC:2.1.1.37)
Putative C-5 cytosine-specific DNA methylase {ECO:0000313|EMBL:CAZ90422.1}; EC=2.1.1.37 {ECO:0000313|EMBL:CAZ90422.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderia
Putative C-5 cytosine-specific DNA methylase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CVT3_THIA3
SCNpilot_expt_300_bf_scaffold_85_6
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2564..2797
DNA (234bp) protein (78aa)
Uncharacterized protein {ECO:0000313|EMBL:EWC53149.1}; TaxID=1401257 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axono
SCNpilot_expt_300_bf_scaffold_85_7
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3002..3205)
DNA (204bp) protein (68aa)
carbon storage regulator n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EBEB5D
Carbon storage regulator homolog {ECO:0000256|HAMAP-Rule:MF_00167, ECO:0000256|SAAS:SAAS00093889}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadacea
carbon starvation protein CstA
SCNpilot_expt_300_bf_scaffold_85_8
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3345..5996)
DNA (2652bp) protein (884aa)
Alanine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00036}; EC=6.1.1.7 {ECO:0000255|HAMAP-Rule:MF_00036};; Alanyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00036}; Short=AlaRS {ECO:0000255|HAMAP-Rule:MF_
alaS; alanyl-tRNA synthetase (EC:6.1.1.7)
alanyl-tRNA synthetase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037685DD rbh
SCNpilot_expt_300_bf_scaffold_85_9
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6095..6586)
DNA (492bp) protein (164aa)
Regulatory protein RecX n=1 Tax=Stenotrophomonas maltophilia RA8 RepID=M5CXK7_STEMA
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Steno
recX; recombination regulator RecX
SCNpilot_expt_300_bf_scaffold_85_10
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6692..7726)
DNA (1035bp) protein (345aa)
Protein RecA n=35 Tax=Stenotrophomonas RepID=RECA_STRMK rbh
recA; recombinase A
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1183154 species="Bacteria; Proteoba
SCNpilot_expt_300_bf_scaffold_85_11
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7910..8557)
DNA (648bp) protein (216aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=40324 species="Bacteria; Proteoba
lexA2; LexA repressor (EC:3.4.21.88)
LexA family transcriptional regulator n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EDC2A4 rbh
SCNpilot_expt_300_bf_scaffold_85_12
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8647..10326)
DNA (1680bp) protein (560aa)
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthom
ubiquinone biosynthesis protein UbiB n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030AED90 rbh
ubiquinone biosynthesis protein
SCNpilot_expt_300_bf_scaffold_85_13
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10364..10861)
DNA (498bp) protein (166aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7USD4_PSEUP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AER56006.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanth
SCNpilot_expt_300_bf_scaffold_85_14
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10939..12528)
DNA (1590bp) protein (530aa)
mltD; membrane-bound lytic murein transglycosylase D (EC:3.2.1.-)
Putative membrane-bound lytic murein transglycosylase d {ECO:0000313|EMBL:CAQ46860.1}; EC=3.2.1.- {ECO:0000313|EMBL:CAQ46860.1};; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; X
murein transglycosylase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00036F1491 rbh
SCNpilot_expt_300_bf_scaffold_85_15
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12641..14146
DNA (1506bp) protein (502aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JXH8_STEMA rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEM52207.1}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltop
SCNpilot_expt_300_bf_scaffold_85_16
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14187..15479
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8Z3Z0_XANCT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKU25625.1}; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas trans
membrane protein
SCNpilot_expt_300_bf_scaffold_85_17
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15525..16985)
DNA (1461bp) protein (487aa)
Rhomboid-like protease 4 {ECO:0000313|EMBL:CCP39167.1}; EC=3.4.21.105 {ECO:0000313|EMBL:CCP39167.1};; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonad
Rhomboid-like protease 4 n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0SSZ7_XANCT rbh
rhomboid family membrane protein
SCNpilot_expt_300_bf_scaffold_85_18
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17088..17594
DNA (507bp) protein (169aa)
transcription elongation factor GreB n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003075E60
Transcription elongation factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; Transcript cleavage factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobac
greB; transcription elongation factor GreB
SCNpilot_expt_300_bf_scaffold_85_19
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17749..18612)
DNA (864bp) protein (288aa)
Putative uncharacterized protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L4E6_9GAMM rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EED37456.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Sten
hypothetical protein
SCNpilot_expt_300_bf_scaffold_85_20
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18609..19970)
DNA (1362bp) protein (454aa)
ribosomal protein S12 methylthiotransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000302A4C2 rbh
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase
30S ribosomal protein S12 methylthiotransferase RimO
SCNpilot_expt_300_bf_scaffold_85_21
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20113..20772
DNA (660bp) protein (220aa)
carboxymethylenebutenolidase (EC:3.1.1.45)
Dienelactone hydrolase family protein n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TJ38_STEMA
Carboxymethylenebutenolidase {ECO:0000313|EMBL:KDE91184.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas
SCNpilot_expt_300_bf_scaffold_85_22
Xanthomonas vesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20769..21191
DNA (423bp) protein (141aa)
Diadenosine tetraphosphate hydrolase and other HIT family hydrolase n=1 Tax=Xanthomonas campestris pv. raphani 756C RepID=G0CKR2_XANCA
diadenosine tetraphosphate hydrolase
HIT family hydrolase, diadenosine tetraphosphate hydrolase {ECO:0000313|EMBL:EGD08605.1}; TaxID=925775 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xantho
SCNpilot_expt_300_bf_scaffold_85_23
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21222..21389
DNA (168bp) protein (56aa)
Uncharacterized protein n=3 Tax=Xanthomonas campestris pv. translucens RepID=L0SSW7_XANCT
membrane protein
Putative membrane protein {ECO:0000313|EMBL:EKU25620.1}; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas tra
SCNpilot_expt_300_bf_scaffold_85_24
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21462..22034)
DNA (573bp) protein (191aa)
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13)
Deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146};; TaxID=56458 species="Ba
deoxycytidine triphosphate deaminase n=1 Tax=Xanthomonas RepID=UPI000262A7AA rbh
SCNpilot_expt_300_bf_scaffold_85_25
Xanthomonas gardneri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22141..22983)
DNA (843bp) protein (281aa)
ATPase involved in chromosome partitioning n=1 Tax=Xanthomonas gardneri ATCC 19865 RepID=F0CAV3_9XANT rbh
ATPase involved in chromosome partitioning {ECO:0000313|EMBL:EGD17329.1}; Flags: Precursor;; TaxID=925777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xan
hypothetical protein
SCNpilot_expt_300_bf_scaffold_85_26
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23324..26185
DNA (2862bp) protein (954aa)
TonB-dependent receptor n=1 Tax=Xanthomonas fragariae LMG 25863 RepID=R0E605_9XANT rbh
TonB-dependent receptor {ECO:0000313|EMBL:KGE51265.1}; TaxID=325777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonop
TonB-dependent receptor
SCNpilot_expt_300_bf_scaffold_85_27
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26336..28300
DNA (1965bp) protein (655aa)
peptidase S9 prolyl oligopeptidase active site domain protein n=1 Tax=Xanthomonas sacchari RepID=UPI000262A7A5 rbh
Peptidase S9 {ECO:0000313|EMBL:AHY58262.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizoph
peptidase S9
SCNpilot_expt_300_bf_scaffold_85_28
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28416..29228
DNA (813bp) protein (271aa)
Uncharacterized protein {ECO:0000313|EMBL:AHY58261.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomo
Putative uncharacterized protein id=2495003 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Sel1 domain-containing protein repeat-containing protein
SCNpilot_expt_300_bf_scaffold_85_29
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29245..30852)
DNA (1608bp) protein (536aa)
Phytoene dehydrogenase n=3 Tax=Xanthomonas RepID=Q8PJ01_XANAC rbh
Phytoene dehydrogenase rbh
Phytoene dehydrogenase {ECO:0000313|EMBL:AGH78233.1}; TaxID=1304892 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonop
SCNpilot_expt_300_bf_scaffold_85_30
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31005..33104
DNA (2100bp) protein (700aa)
pepO; endopeptidase O (EC:3.4.24.-)
peptidase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030812AD rbh
Peptidase {ECO:0000313|EMBL:AHY58259.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila
Displaying items 1-30 of 151 in total

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