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SCNpilot_expt_300_bf_scaffold_827

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_827_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..913
DNA (912bp) protein (304aa)
putative DNA topoisomerase III; K03169 DNA topoisomerase III [EC:5.99.1.2] id=12498591 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
DNA topoisomerase III (EC:5.99.1.2) Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
DNA topoisomerase III (EC:5.99.1.2)
SCNpilot_expt_300_bf_scaffold_827_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1124..1399
DNA (276bp) protein (92aa)
peptidase S49 id=12498592 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
peptidase S49 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_300_bf_scaffold_827_3
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1427..2062
DNA (636bp) protein (212aa)
signal peptide peptidase SppA, 36K type; K04773 protease IV [EC:3.4.21.-] Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
peptidase S49 n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B511E
signal peptide peptidase SppA, 36K type
SCNpilot_expt_300_bf_scaffold_827_4
Thiobacillus sp. SCN2, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2157..2462
DNA (306bp) protein (102aa)
hypothetical protein id=12498594 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein id=12498594 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
SCNpilot_expt_300_bf_scaffold_827_5
delta proteobacterium MLMS-1, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2482..2643
DNA (162bp) protein (54aa)
hypothetical protein id=12498595 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:EAT02703.1}; TaxID=262489 species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium MLMS-1.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_827_6
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2858..3286)
DNA (429bp) protein (143aa)
redox protein, regulator of disulfide bond formation id=12498596 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
redox protein, regulator of disulfide bond formation
Redox protein, regulator of disulfide bond formation {ECO:0000313|EMBL:BAN36890.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella
SCNpilot_expt_300_bf_scaffold_827_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3310..3540)
DNA (231bp) protein (77aa)
thiol-disulfide isomerase/thioredoxin id=12498597 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
thiol-disulfide isomerase
Thiol-disulfide isomerase/thioredoxin {ECO:0000313|EMBL:AAZ97382.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="
SCNpilot_expt_300_bf_scaffold_827_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3552..4358)
DNA (807bp) protein (269aa)
arsM; arsenite S-adenosylmethyltransferase id=12498598 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
arsM; arsenite S-adenosylmethyltransferase
Uncharacterized protein {ECO:0000313|EMBL:AAZ97381.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
SCNpilot_expt_300_bf_scaffold_827_9
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4370..4684)
DNA (315bp) protein (105aa)
hypothetical protein id=12498599 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:GAO35391.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp.
hypothetical protein
SCNpilot_expt_300_bf_scaffold_827_10
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4681..5643)
DNA (963bp) protein (321aa)
permease id=12498600 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
permease
Permease {ECO:0000313|EMBL:BAN35963.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26
SCNpilot_expt_300_bf_scaffold_827_11
GWF2_Sideroxydans_59_14_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5643..6569)
DNA (927bp) protein (309aa)
beta-lactamase domain-containing protein id=12498601 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
beta-lactamase domain-containing protein Tax=GWF2_Sideroxydans_59_14_curated
beta-lactamase domain-containing protein
SCNpilot_expt_300_bf_scaffold_827_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6580..7659)
DNA (1080bp) protein (360aa)
ACR3 family arsenite transporter; K03325 arsenite transporter, ACR3 family id=12498602 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
ACR3 family arsenite transporter
Putative arsenite transporter, ACR3 family {ECO:0000313|EMBL:AAZ97379.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" sou
SCNpilot_expt_300_bf_scaffold_827_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7656..8153)
DNA (498bp) protein (166aa)
arsC1; putative arsenate reductase (glutaredoxin) (EC:1.20.4.1); K03741 arsenate reductase [EC:1.20.4.1] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Protein-tyrosine phosphatase, low molecular weight id=12498603 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
Protein-tyrosine phosphatase, low molecular weight
SCNpilot_expt_300_bf_scaffold_827_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8171..8599)
DNA (429bp) protein (143aa)
protein tyrosine phosphatase; K03741 arsenate reductase [EC:1.20.4.1] id=12498604 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
protein tyrosine phosphatase; K03741 arsenate reductase [EC:1.20.4.1] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
protein tyrosine phosphatase
SCNpilot_expt_300_bf_scaffold_827_15
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9624..10439
DNA (816bp) protein (272aa)
SoxAX cytochrome complex subunit A {ECO:0000256|PIRNR:PIRNR038455}; EC=1.8.2.- {ECO:0000256|PIRNR:PIRNR038455};; Protein SoxA {ECO:0000256|PIRNR:PIRNR038455}; Sulfur oxidizing protein A {ECO:0000256|P
hypothetical protein id=12498605 bin=THIO_MID species=Thiothrix disciformis genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein
SCNpilot_expt_300_bf_scaffold_827_16
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10454..10885
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Thiothrix disciformis RepID=UPI00036A5C46
Sulfur oxidation protein SoxX {ECO:0000313|EMBL:EJW10472.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum s
hypothetical protein
SCNpilot_expt_300_bf_scaffold_827_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10882..11037
DNA (156bp) protein (52aa)
soxX; SoxX protein id=12498606 bin=THIO_MID species=Thiothrix flexilis genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
hypothetical protein
SCNpilot_expt_300_bf_scaffold_827_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11103..11570
DNA (468bp) protein (156aa)
transmembrane protein id=12498607 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
transmembrane protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
transmembrane protein
SCNpilot_expt_300_bf_scaffold_827_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11620..11934
DNA (315bp) protein (105aa)
sulfur compound chelating protein SoxZ id=12498608 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
sulfur compound chelating protein SoxZ
Uncharacterized protein {ECO:0000313|EMBL:AAZ96518.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
SCNpilot_expt_300_bf_scaffold_827_20
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12215..13033
DNA (819bp) protein (273aa)
phosphonate ABC transporter, periplasmic phosphonate-binding protein; K02044 phosphonate transport system substrate-binding protein id=12498609 bin=THIO_MID species=Thiomicrospira halophila genus=Thiomicrospira taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
phosphonate ABC transporter substrate-binding protein; K02044 phosphonate transport system substrate-binding protein Tax=RBG_16_Betaproteobacteria_56_24_curated
phosphonate ABC transporter, periplasmic phosphonate-binding protein
SCNpilot_expt_300_bf_scaffold_827_21
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13030..14376
DNA (1347bp) protein (449aa)
integral membrane sensor signal transduction histidine kinase id=12498610 bin=THIO_MID species=Thiomicrospira halophila genus=Thiomicrospira taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
integral membrane sensor signal transduction histidine kinase Tax=CG_Thiomicrospira_01
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_300_bf_scaffold_827_22
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14373..15719
DNA (1347bp) protein (449aa)
two component, sigma54 specific, transcriptional regulator, Fis family id=12498611 bin=THIO_MID species=Thioalkalimicrobium cyclicum genus=Thioalkalimicrobium taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
two component, sigma54 specific, transcriptional regulator, Fis family Tax=CG_Thiomicrospira_01
Fis family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_827_23
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15903..16286)
DNA (384bp) protein (128aa)
phage integrase family protein id=12498113 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tyrosine recombinase XerD {ECO:0000313|EMBL:KFB71090.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;
phage integrase family protein
SCNpilot_expt_300_bf_scaffold_827_24
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16477..17451)
DNA (975bp) protein (325aa)
transposase, IS4 id=12498613 bin=THIO_MID species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
Transposase IS4 family protein {ECO:0000313|EMBL:EER59864.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax dela
transposase, IS4
SCNpilot_expt_300_bf_scaffold_827_25
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17497..17685)
DNA (189bp) protein (63aa)
xerD; tyrosine recombinase XerD id=12498614 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Integrase family protein {ECO:0000313|EMBL:EEG09669.1}; TaxID=279714 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulben
xerD; tyrosine recombinase XerD
Displaying 25 items

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