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SCNpilot_expt_300_bf_scaffold_28

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Displaying items 1-30 of 380 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_28_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67..474)
DNA (408bp) protein (136aa)
Putative AP endonuclease, family 2 n=1 Tax=Variovorax paradoxus B4 RepID=T1XIS7_VARPD
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35778.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonad
putative AP endonuclease, family 2
SCNpilot_expt_300_bf_scaffold_28_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

561..1505
DNA (945bp) protein (315aa)
Putative glutamine amidotransferase n=1 Tax=Variovorax sp. CF313 RepID=J2TM72_9BURK rbh
Putative glutamine amidotransferase {ECO:0000313|EMBL:EJL79682.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;
peptidase C26
SCNpilot_expt_300_bf_scaffold_28_3
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1527..3167)
DNA (1641bp) protein (547aa)
acyl-CoA dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI000364A934 rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KGH15909.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pse
acyl-CoA dehydrogenase
SCNpilot_expt_300_bf_scaffold_28_4
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3199..4032)
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000370E054 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK57577.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis
SCNpilot_expt_300_bf_scaffold_28_5
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4104..4739
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003642386 rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:KGH25904.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas te
transcriptional regulator, TetR family
SCNpilot_expt_300_bf_scaffold_28_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4741..4950)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000369F00A
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35780.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonad
hypothetical protein
SCNpilot_expt_300_bf_scaffold_28_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5043..5915)
DNA (873bp) protein (291aa)
N-formylglutamate amidohydrolase n=1 Tax=Variovorax paradoxus RepID=UPI000380B683 rbh
putative N-formylglutamate amidohydrolase
Putative N-formylglutamate amidohydrolase {ECO:0000313|EMBL:AGU52466.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Var
SCNpilot_expt_300_bf_scaffold_28_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5929..6891)
DNA (963bp) protein (321aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003625185 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS21807.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Var
SCNpilot_expt_300_bf_scaffold_28_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7003..7941
DNA (939bp) protein (313aa)
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00037C3910 rbh
transcriptional regulator, LysR family
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGU52464.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variov
SCNpilot_expt_300_bf_scaffold_28_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7961..8947)
DNA (987bp) protein (329aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00036BC64D rbh
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35781.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonad
hypothetical protein
SCNpilot_expt_300_bf_scaffold_28_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8951..11914)
DNA (2964bp) protein (988aa)
DNA topoisomerase {ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|SAAS:SAAS00046608};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; V
DNA topoisomerase III n=1 Tax=Variovorax sp. CF313 RepID=J2KHL1_9BURK rbh
DNA topoisomerase iii
SCNpilot_expt_300_bf_scaffold_28_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12042..12665
DNA (624bp) protein (208aa)
Nuclear protein SET n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYV6_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35783.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonad
nuclear protein set
SCNpilot_expt_300_bf_scaffold_28_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12668..13480
DNA (813bp) protein (271aa)
BirA, biotin-(Acetyl-CoA-carboxylase) ligase n=1 Tax=Variovorax sp. CF313 RepID=J2TM78_9BURK rbh
BirA, biotin-(Acetyl-CoA-carboxylase) ligase {ECO:0000313|EMBL:EJL79687.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Var
biotin/acetyL-CoA-carboxylase ligase
SCNpilot_expt_300_bf_scaffold_28_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13494..13742
DNA (249bp) protein (83aa)
Sporulation domain-containing protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYV4_VARPE
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35785.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonad
sporulation domain-containing protein
SCNpilot_expt_300_bf_scaffold_28_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13749..15191)
DNA (1443bp) protein (481aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Signal transduction histidine kinase n=1 Tax=Variovorax sp. CF313 RepID=J3CW42_9BURK rbh
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_300_bf_scaffold_28_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15229..15903)
DNA (675bp) protein (225aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Variovorax sp. CF313 RepID=J2KHL5_9BURK rbh
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EJL79690.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiale
winged helix family two component transcriptional regulator
SCNpilot_expt_300_bf_scaffold_28_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15970..16455)
DNA (486bp) protein (162aa)
Regulatory protein MarR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYU9_VARPE rbh
MarR family transcriptional regulator
Regulatory protein MarR {ECO:0000313|EMBL:ADU40074.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (
SCNpilot_expt_300_bf_scaffold_28_18
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16828..17211)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZFK7_9FIRM
hypothetical protein
Uncharacterized protein Tax=RBG_16_Gammaproteobacteria_57_12_curated
SCNpilot_expt_300_bf_scaffold_28_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17259..17669
DNA (411bp) protein (137aa)
Protein RecA n=1 Tax=Variovorax sp. CF313 RepID=J2TM82_9BURK
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1144315 species="Bacteria; Proteoba
reca protein
SCNpilot_expt_300_bf_scaffold_28_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17715..18176
DNA (462bp) protein (154aa)
Regulatory protein RecX n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYU7_VARPE
RecX family transcriptional regulator
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovora
SCNpilot_expt_300_bf_scaffold_28_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18157..18588
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003747371
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU40071.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (
SCNpilot_expt_300_bf_scaffold_28_22
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18590..19699)
DNA (1110bp) protein (370aa)
Mandelate racemase/muconate lactonizing enzyme n=1 Tax=Burkholderia pseudomallei MSHR346 RepID=C4I1V7_BURPE rbh
mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein
Mandelate racemase/muconate lactonizing enzyme {ECO:0000313|EMBL:EEP50549.1}; TaxID=536230 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseud
SCNpilot_expt_300_bf_scaffold_28_23
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19705..20532)
DNA (828bp) protein (276aa)
Amino acid ABC transporter/signal transduction system periplasmic binding protein n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7SU26_ALCXX rbh
Amino acid ABC transporter/signal transduction system periplasmic binding protein {ECO:0000313|EMBL:EGP48471.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; A
extracellular solute-binding protein, family 3
SCNpilot_expt_300_bf_scaffold_28_24
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20565..21293)
DNA (729bp) protein (243aa)
arginine ABC transporter ATP-binding protein n=1 Tax=Comamonas testosteroni RepID=UPI0002E16562 rbh
ABC transporter related
ABC transporter related {ECO:0000313|EMBL:CCH09953.1}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylo
SCNpilot_expt_300_bf_scaffold_28_25
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21277..21933)
DNA (657bp) protein (219aa)
ABC transporter, membrane spanning protein n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4Y1T5_ALCXX rbh
ABC transporter, membrane spanning protein
ABC transporter, membrane spanning protein {ECO:0000313|EMBL:CCH09952.1}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source=
SCNpilot_expt_300_bf_scaffold_28_26
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21950..22633)
DNA (684bp) protein (228aa)
ABC transporter permease n=1 Tax=Comamonas testosteroni RepID=UPI0003101052 rbh
Amino acid ABC transporter permease {ECO:0000313|EMBL:EGP48468.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achrom
ABC transporter permease
SCNpilot_expt_300_bf_scaffold_28_27
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22681..23913)
DNA (1233bp) protein (411aa)
Altronate hydrolase (EC:4.2.1.7) rbh
Altronate hydrolase {ECO:0000313|EMBL:CCH09950.1}; EC=4.2.1.7 {ECO:0000313|EMBL:CCH09950.1};; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achr
Altronate hydrolase n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XYS7_ALCXX rbh
SCNpilot_expt_300_bf_scaffold_28_28
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23928..24242)
DNA (315bp) protein (105aa)
D-galactarate dehydratase/Altronate hydrolase, family protein n=1 Tax=Achromobacter xylosoxidans C54 RepID=E5U902_ALCXX
hydrolase
Hydrolase {ECO:0000313|EMBL:AIR52851.1}; TaxID=562971 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans C54.;"
SCNpilot_expt_300_bf_scaffold_28_29
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24254..24928)
DNA (675bp) protein (225aa)
Putative methyltransferase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WKH9_VEREI rbh
putative methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:ABM58136.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrob
SCNpilot_expt_300_bf_scaffold_28_30
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25159..25929
DNA (771bp) protein (257aa)
3-hydroxybutyrate dehydrogenase (EC:1.1.1.30)
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:ADX45583.1}; EC=1.1.1.30 {ECO:0000313|EMBL:ADX45583.1};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
oxidoreductase n=1 Tax=Acidovorax avenae RepID=UPI000367D8E2 rbh
Displaying items 1-30 of 380 in total

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