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SCNpilot_expt_300_bf_scaffold_53

Search features with annotation key words

Displaying items 1-30 of 313 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_53_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1992)
DNA (1992bp) protein (664aa)
Amino acid adenylation domain protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V978_VARPE
amino acid adenylation domain-containing protein
Amino acid adenylation domain protein {ECO:0000313|EMBL:ADU38493.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovor
SCNpilot_expt_300_bf_scaffold_53_2
Azotobacter chroococcum, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2077..6675)
DNA (4599bp) protein (1533aa)
Beta-ketoacyl synthase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V980_VARPE
Uncharacterized protein {ECO:0000313|EMBL:AJE23277.1}; TaxID=1328314 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter chroo
Polyketide synthase type I
SCNpilot_expt_300_bf_scaffold_53_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6672..7109)
DNA (438bp) protein (146aa)
Amino acid adenylation domain protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V981_VARPE
amino acid adenylation domain-containing protein
Amino acid adenylation domain protein {ECO:0000313|EMBL:ADU38496.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovor
SCNpilot_expt_300_bf_scaffold_53_4
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7694..8563
DNA (870bp) protein (290aa)
Putative non-ribosomal peptide synthetase n=1 Tax=Pseudomonas aeruginosa 39016 RepID=E3A2M6_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:EZP50125.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_53_5
unknown

Not on your lists

comp(8718..9416)
DNA (699bp) protein (233aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_53_6
unknown

Not on your lists

9434..9604
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_53_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9886..12972)
DNA (3087bp) protein (1029aa)
Amino acid adenylation enzyme/thioester reductase family protein n=1 Tax=Variovorax sp. CF313 RepID=J2KCH0_9BURK rbh
Amino acid adenylation enzyme/thioester reductase family protein {ECO:0000313|EMBL:EJL70863.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Va
amino acid adenylation domain-containing protein
SCNpilot_expt_300_bf_scaffold_53_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12969..20051)
DNA (7083bp) protein (2361aa)
Polyketide synthase family protein n=1 Tax=Variovorax sp. CF313 RepID=J2KPR3_9BURK rbh
Polyketide synthase family protein {ECO:0000313|EMBL:EJL75038.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax
beta-ketoacyl synthase
SCNpilot_expt_300_bf_scaffold_53_9
Azotobacter chroococcum, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20051..25363)
DNA (5313bp) protein (1771aa)
Amino acid adenylation domain protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CUE9_VARPS rbh
Uncharacterized protein {ECO:0000313|EMBL:AJE23278.1}; TaxID=1328314 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter chroo
amino acid adenylation domain protein
SCNpilot_expt_300_bf_scaffold_53_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25427..26167)
DNA (741bp) protein (247aa)
Putative thioesterase involved in non-ribosomal peptide biosynthesis n=1 Tax=Variovorax sp. CF313 RepID=J2K4F2_9BURK rbh
Putative thioesterase involved in non-ribosomal peptide biosynthesis {ECO:0000313|EMBL:EJL75040.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderia
thioesterase
SCNpilot_expt_300_bf_scaffold_53_11
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26172..26420)
DNA (249bp) protein (83aa)
Protein MbtH n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HPS8_ACHXA
mbtH; protein MbtH
Protein MbtH {ECO:0000313|EMBL:ADP15912.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (st
SCNpilot_expt_300_bf_scaffold_53_12
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26626..26886)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Thauera phenylacetica B4P RepID=N6Z5C6_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO99085.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.
hypothetical protein
SCNpilot_expt_300_bf_scaffold_53_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26912..27442)
DNA (531bp) protein (177aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CUF5_VARPS
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACS20368.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source
SCNpilot_expt_300_bf_scaffold_53_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27739..29967)
DNA (2229bp) protein (743aa)
Acyl-homoserine-lactone acylase {ECO:0000313|EMBL:ADU38483.1}; EC=3.5.1.97 {ECO:0000313|EMBL:ADU38483.1};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
acyL-homoserine-lactone acylase (EC:3.5.1.97)
Acyl-homoserine-lactone acylase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V968_VARPE rbh
SCNpilot_expt_300_bf_scaffold_53_15
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30096..30542)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q121W3_POLSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE46679.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (stra
SCNpilot_expt_300_bf_scaffold_53_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30747..31367
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XKH1_VARPD rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU53387.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus
SCNpilot_expt_300_bf_scaffold_53_17
Streptomyces scabiei, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31472..32557
DNA (1086bp) protein (362aa)
NmrA-like protein n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2G9V0_BURVI rbh
NmrA family protein {ECO:0000313|EMBL:KFF96106.1}; TaxID=1930 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces scabiei.;"
nmrA-like family protein
SCNpilot_expt_300_bf_scaffold_53_18
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32654..33241
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GRN8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF80267.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp
TetR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_53_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33271..34512)
DNA (1242bp) protein (414aa)
Major facilitator superfamily MFS_1 n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V635_VARPE rbh
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADU38270.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax
SCNpilot_expt_300_bf_scaffold_53_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34945..35514
DNA (570bp) protein (190aa)
Transcriptional regulator n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HQ46_9RHIZ
Variovorax paradoxus strain MEDvA23 contig_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ36205.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonad
transcriptional regulator, TetR family
SCNpilot_expt_300_bf_scaffold_53_21
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35539..37233)
DNA (1695bp) protein (565aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI0003770E74 rbh
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EJL93458.1}; Flags: Precursor;; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspiri
methyl-accepting chemotaxis sensory transducer
SCNpilot_expt_300_bf_scaffold_53_22
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37501..38220
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036D0F70 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGF81621.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;
two component transcriptional regulator, LuxR family
SCNpilot_expt_300_bf_scaffold_53_23
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

38217..40733
DNA (2517bp) protein (839aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000366CDD3 rbh
ladS; lost Adherence Sensor Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
integral membrane sensor hybrid histidine kinase
SCNpilot_expt_300_bf_scaffold_53_24
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40774..41895)
DNA (1122bp) protein (374aa)
2-nitropropane dioxygenase NPD n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2E7P9_9GAMM rbh
dihydroorotate dehydrogenase family protein
Dihydroorotate dehydrogenase family protein {ECO:0000313|EMBL:AIO43674.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderi
SCNpilot_expt_300_bf_scaffold_53_25
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41987..42862
DNA (876bp) protein (292aa)
LysR family transcriptional regulator n=1 Tax=Ralstonia solanacearum RepID=UPI0001817242 rbh
hth-type transcriptional regulator benm
LysR family transcriptional regulator {ECO:0000313|EMBL:KFX26606.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ17654.1}; TaxID=305 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderi
SCNpilot_expt_300_bf_scaffold_53_26
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42859..44025
DNA (1167bp) protein (389aa)
Putative membrane protein n=1 Tax=Idiomarina baltica OS145 RepID=A3WJM1_9GAMM rbh
Transport protein {ECO:0000313|EMBL:EZP39946.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium li
putative membrane protein
SCNpilot_expt_300_bf_scaffold_53_27
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44049..45803)
DNA (1755bp) protein (585aa)
YadA domain-containing protein n=1 Tax=Burkholderia sp. (strain CCGE1003) RepID=E1T4Y9_BURSG
Cell surface protein {ECO:0000313|EMBL:AIY44186.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_53_28
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46344..47831)
DNA (1488bp) protein (496aa)
Transcriptional regulator, GntR family with aminotransferase domain n=1 Tax=Ralstonia pickettii (strain 12J) RepID=B2UFZ7_RALPJ rbh
GntR family transcriptional regulator
Transcriptional regulator, GntR family with aminotransferase domain {ECO:0000313|EMBL:ACD28524.1}; TaxID=402626 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae
SCNpilot_expt_300_bf_scaffold_53_29
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47888..48940
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2EF50_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EKZ97960.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HM
hypothetical protein
SCNpilot_expt_300_bf_scaffold_53_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48882..49748)
DNA (867bp) protein (289aa)
PEP phosphonomutase-like enzyme n=1 Tax=Variovorax sp. CF313 RepID=J2T7P7_9BURK rbh
PEP phosphonomutase-like enzyme {ECO:0000313|EMBL:EJL74072.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp
isocitrate lyase family protein
Displaying items 1-30 of 313 in total

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