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SCNpilot_expt_300_bf_scaffold_83

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Displaying items 1-30 of 181 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_83_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..98
DNA (96bp) protein (32aa)
Elongation factor Tu n=1 Tax=Variovorax paradoxus B4 RepID=T1XHY7_VARPD
translation elongation factor tu
Translation elongation factor-like GTPase {ECO:0000313|EMBL:EJL77525.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Var
SCNpilot_expt_300_bf_scaffold_83_2
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


120..434
DNA (315bp) protein (105aa)
30S ribosomal protein S10 n=7 Tax=Comamonadaceae RepID=RS10_POLNA
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp
SCNpilot_expt_300_bf_scaffold_83_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

581..2185
DNA (1605bp) protein (535aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VBE8_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_22, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33380.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
hypothetical protein
SCNpilot_expt_300_bf_scaffold_83_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2197..2721
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XJ63_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU52150.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus
SCNpilot_expt_300_bf_scaffold_83_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2946..3626
DNA (681bp) protein (227aa)
50S ribosomal protein L3 n=1 Tax=Variovorax sp. CF313 RepID=J2JN55_9BURK rbh
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovo
rplC; 50S ribosomal protein L3
SCNpilot_expt_300_bf_scaffold_83_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3626..4246
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=1 Tax=Variovorax paradoxus RepID=UPI00036EB6BD rbh
50S ribosomal protein L4/l1e
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax parad
SCNpilot_expt_300_bf_scaffold_83_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4243..4578
DNA (336bp) protein (112aa)
50S ribosomal protein L23 n=4 Tax=Variovorax RepID=C5CP51_VARPS
rplW; 50S ribosomal protein L23
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovo
SCNpilot_expt_300_bf_scaffold_83_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4581..5405
DNA (825bp) protein (275aa)
50S ribosomal protein L2 n=1 Tax=Variovorax sp. CF313 RepID=J2K7T3_9BURK rbh
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. C
rplB; 50S ribosomal protein L2
SCNpilot_expt_300_bf_scaffold_83_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5416..5694
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=4 Tax=Variovorax RepID=RS19_VARPS
30S ribosomal protein S19
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax parad
SCNpilot_expt_300_bf_scaffold_83_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5704..6036
DNA (333bp) protein (111aa)
50S ribosomal protein L22 n=4 Tax=Variovorax RepID=RL22_VARPS
rplV; 50S ribosomal protein L22
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovo
SCNpilot_expt_300_bf_scaffold_83_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6054..6965
DNA (912bp) protein (304aa)
30S ribosomal protein S3 n=1 Tax=Variovorax paradoxus RepID=UPI00037635CE rbh
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradox
30S ribosomal protein S3
SCNpilot_expt_300_bf_scaffold_83_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7018..7434
DNA (417bp) protein (139aa)
50S ribosomal protein L16 n=2 Tax=Variovorax RepID=E6VBD9_VARPE
50S ribosomal protein L16
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovo
SCNpilot_expt_300_bf_scaffold_83_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7448..7699
DNA (252bp) protein (84aa)
50S ribosomal protein L29 n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CP45_VARPS
50S ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax parad
SCNpilot_expt_300_bf_scaffold_83_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7709..7978
DNA (270bp) protein (90aa)
30S ribosomal protein S17 n=2 Tax=Variovorax paradoxus RepID=RS17_VARPS
rpsQ; 30S ribosomal protein S17
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variov
SCNpilot_expt_300_bf_scaffold_83_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8061..8567
DNA (507bp) protein (169aa)
Redoxin domain protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VBD6_VARPE rbh
redoxin domain-containing protein
Redoxin domain protein {ECO:0000313|EMBL:ADU39736.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (s
SCNpilot_expt_300_bf_scaffold_83_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8573..9160)
DNA (588bp) protein (196aa)
GCN5 family acetyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00037CA4A6 rbh
Acetyltransferase {ECO:0000313|EMBL:EJL69306.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
GCN5-like N-acetyltransferaser rbh
SCNpilot_expt_300_bf_scaffold_83_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9157..9918)
DNA (762bp) protein (254aa)
cytochrome B561 n=1 Tax=Variovorax paradoxus RepID=UPI0003737D57 rbh
Cytochrome b {ECO:0000313|EMBL:EJL69307.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
cytochrome b561
SCNpilot_expt_300_bf_scaffold_83_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10026..10472
DNA (447bp) protein (149aa)
Cytochrome c class II n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VBD3_VARPE
Variovorax paradoxus strain MEDvA23 contig_22, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33393.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
cytochrome c class ii
SCNpilot_expt_300_bf_scaffold_83_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10524..11021)
DNA (498bp) protein (166aa)
redoxin n=1 Tax=Variovorax paradoxus RepID=UPI0003694837 rbh
Peroxiredoxin {ECO:0000313|EMBL:EJL69309.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax s
redoxin domain-containing protein
SCNpilot_expt_300_bf_scaffold_83_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11177..11662
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2JN70_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL69310.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
hypothetical protein
SCNpilot_expt_300_bf_scaffold_83_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11815..12270
DNA (456bp) protein (152aa)
Phosphotransferase system, mannose/fructose-specific component IIA n=1 Tax=Variovorax sp. CF313 RepID=J3CDK1_9BURK
Phosphotransferase system, mannose/fructose-specific component IIA {ECO:0000313|EMBL:EJL69311.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiale
putative fructose-specific PTS system, IIA component
SCNpilot_expt_300_bf_scaffold_83_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12239..12508
DNA (270bp) protein (90aa)
phosphocarrier protein HPr n=1 Tax=Variovorax paradoxus RepID=UPI00037B373E
phosphotransferase system, phosphocarrier protein hpr
Phosphotransferase system, phosphocarrier protein HPr {ECO:0000313|EMBL:ADU39729.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;"
SCNpilot_expt_300_bf_scaffold_83_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12519..14330
DNA (1812bp) protein (604aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=
phosphoenolpyruvate-protein phosphotransferase (EC:2.7.3.9)
phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Variovorax paradoxus RepID=UPI000366AD2F rbh
SCNpilot_expt_300_bf_scaffold_83_24
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14393..15109
DNA (717bp) protein (239aa)
Putative membrane protein n=1 Tax=Caulobacter sp. AP07 RepID=J2PZJ9_9CAUL
Putative membrane protein {ECO:0000313|EMBL:EJL33277.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" sour
permease
SCNpilot_expt_300_bf_scaffold_83_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15216..15593
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CD89_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL69314.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
hypothetical protein
SCNpilot_expt_300_bf_scaffold_83_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15705..16169
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2JN76_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL69315.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
hypothetical protein
SCNpilot_expt_300_bf_scaffold_83_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16294..16686
DNA (393bp) protein (131aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CP33_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS21497.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (
SCNpilot_expt_300_bf_scaffold_83_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16680..17066
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035C567C
Variovorax paradoxus strain MEDvA23 contig_22, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33402.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
hypothetical protein
SCNpilot_expt_300_bf_scaffold_83_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17051..17809
DNA (759bp) protein (253aa)
response regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003784A6A rbh
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADU39724.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovo
SCNpilot_expt_300_bf_scaffold_83_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17806..19233
DNA (1428bp) protein (476aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
histidine kinase n=1 Tax=Variovorax paradoxus RepID=UPI0003676064 rbh
integral membrane sensor signal transduction histidine kinase
Displaying items 1-30 of 181 in total

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