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SCNpilot_expt_300_bf_scaffold_2

Search features with annotation key words

Displaying items 1-30 of 656 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_2_1
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..98
DNA (96bp) protein (32aa)
bifunctional D-altronate/D-mannonate dehydratase n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002DC0B99
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:KHS44966.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.
mandelate racemase/muconate lactonizing protein
SCNpilot_expt_300_bf_scaffold_2_2
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

127..1374
DNA (1248bp) protein (416aa)
Major facilitator superfamily MFS_1 n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VMK4_CAUST rbh
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADG11727.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulob
SCNpilot_expt_300_bf_scaffold_2_3
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1380..3797
DNA (2418bp) protein (806aa)
Glycoside hydrolase family 31 n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VMK3_CAUST rbh
glycosyl hydrolase family protein
Glycoside hydrolase family 31 {ECO:0000313|EMBL:ADG11726.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter
SCNpilot_expt_300_bf_scaffold_2_4
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3865..5340)
DNA (1476bp) protein (492aa)
Glycerol kinase {ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|SAAS:SAAS00029376};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae;
glpK; glycerol kinase (EC:2.7.1.30)
glycerol kinase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A000
SCNpilot_expt_300_bf_scaffold_2_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5353..6900)
DNA (1548bp) protein (516aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
glpD; glycerol-3-phosphate dehydrogenase (EC:1.1.5.3)
glycerol-3-phosphate dehydrogenase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B54A67
SCNpilot_expt_300_bf_scaffold_2_6
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6986..8233)
DNA (1248bp) protein (416aa)
UPI0003D030E4 related cluster n=1 Tax=unknown RepID=UPI0003D030E4 rbh
major facilitator transporter; K08191 MFS transporter, ACS family, hexuronate transporter Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
major facilitator transporter
SCNpilot_expt_300_bf_scaffold_2_7
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8249..10915)
DNA (2667bp) protein (889aa)
Glycoside hydrolase family 2, sugar binding n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XF17_NOVAD rbh
Beta-galactosidase {ECO:0000313|EMBL:KHS44970.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium su
glycoside hydrolase family protein
SCNpilot_expt_300_bf_scaffold_2_8
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10932..11858)
DNA (927bp) protein (309aa)
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VMK2_CAUST rbh
Putative xylanase {ECO:0000313|EMBL:KHS44960.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sub
hypothetical protein
SCNpilot_expt_300_bf_scaffold_2_9
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11855..13753)
DNA (1899bp) protein (633aa)
beta-glucuronidase (EC:3.2.1.31)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037B13BE rbh
Beta-galactosidase {ECO:0000313|EMBL:KHS44961.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium su
SCNpilot_expt_300_bf_scaffold_2_10
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13861..16110)
DNA (2250bp) protein (750aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F2FA4D rbh
TonB-dependent receptor plug {ECO:0000313|EMBL:KHS44962.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphi
TonB-dependent receptor
SCNpilot_expt_300_bf_scaffold_2_11
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16729..16962
DNA (234bp) protein (78aa)
MFS transporter n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4FCDB
hypothetical protein
Sugar phosphate permease {ECO:0000313|EMBL:EJL22581.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;"
SCNpilot_expt_300_bf_scaffold_2_12
unknown

Not on your lists

17222..17497
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2_13
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17539..18126)
DNA (588bp) protein (196aa)
NAD(P)H-flavin oxidoreductase n=1 Tax=Ralstonia sp. AU12-08 RepID=S9RSE6_9RALS
nitroreductase
Nitroreductase {ECO:0000313|EMBL:AJW43914.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
SCNpilot_expt_300_bf_scaffold_2_14
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18467..19216)
DNA (750bp) protein (250aa)
AraC family transcriptional regulator n=1 Tax=Sphingobium sp. HDIP04 RepID=T0GYP0_9SPHN rbh
AraC family transcriptional regulator {ECO:0000313|EMBL:EQB05792.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sp
SDR-family protein rbh
SCNpilot_expt_300_bf_scaffold_2_15
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19315..20220
DNA (906bp) protein (302aa)
AraC-family transcriptional regulator n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z7Y6_SPHJU
AraC-family transcriptional regulator
AraC-family transcriptional regulator {ECO:0000313|EMBL:BAI98605.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sp
SCNpilot_expt_300_bf_scaffold_2_16
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20463..20783
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1ML07_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW16287.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium jap
hypothetical protein
SCNpilot_expt_300_bf_scaffold_2_17
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20822..21181
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3F9AB
hypothetical protein
Uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_300_bf_scaffold_2_18
unknown

Not on your lists

comp(21499..21633)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2_19
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21630..22025)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B59FE6
Uncharacterized protein {ECO:0000313|EMBL:KHA64341.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
hypothetical protein
SCNpilot_expt_300_bf_scaffold_2_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22388..24733)
DNA (2346bp) protein (782aa)
TonB-dependent receptor n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MTX1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO53263.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
TonB-dependent receptor
SCNpilot_expt_300_bf_scaffold_2_21
Rubinisphaera brasiliensis, Rubinisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(24759..27059)
DNA (2301bp) protein (767aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003635C05
sulfatase
Sulfatase {ECO:0000313|EMBL:ADY61442.1}; TaxID=756272 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rubinisphaera.;" source="Rubinisphaera brasiliensis (strai
SCNpilot_expt_300_bf_scaffold_2_22
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27293..28210
DNA (918bp) protein (306aa)
LysR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQH8_9SPHN
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:BAK68352.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sp
SCNpilot_expt_300_bf_scaffold_2_23
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28302..30638)
DNA (2337bp) protein (779aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003635C05
sulfatase
Sulfatase {ECO:0000313|EMBL:AEG50694.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L
SCNpilot_expt_300_bf_scaffold_2_24
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30645..32276)
DNA (1632bp) protein (544aa)
hypothetical protein n=1 Tax=Hirschia maritima RepID=UPI00035D11CE
Uncharacterized protein {ECO:0000313|EMBL:ETX06331.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
sulfatase
SCNpilot_expt_300_bf_scaffold_2_25
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32524..33969)
DNA (1446bp) protein (482aa)
Na+/solute symporter n=1 Tax=Sphingomonas sp. LH128 RepID=J8VJY8_9SPHN rbh
Na+/solute symporter {ECO:0000313|EMBL:EJU10925.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. L
sodium:solute symporter
SCNpilot_expt_300_bf_scaffold_2_26
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33966..34181)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VU31_9SPHN
Scaffold8, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31704.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
hypothetical protein
SCNpilot_expt_300_bf_scaffold_2_27
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34288..35208)
DNA (921bp) protein (307aa)
Transcriptional regulator n=1 Tax=Sphingomonas sp. LH128 RepID=J8VDN9_9SPHN rbh
Transcriptional regulator {ECO:0000313|EMBL:EZP75615.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphing
LysR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_2_28
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35390..36316
DNA (927bp) protein (309aa)
Dihydrodipicolinate synthetase n=1 Tax=Sphingomonas sp. LH128 RepID=J8SDI2_9SPHN rbh
Dihydrodipicolinate synthase {ECO:0000313|EMBL:GAK69563.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacteriu
dihydrodipicolinate synthetase
SCNpilot_expt_300_bf_scaffold_2_29
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36320..37513
DNA (1194bp) protein (398aa)
FAD dependent oxidoreductase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VSC3_9SPHN rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:EZP75611.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosph
FAD-dependent oxidoreductase
SCNpilot_expt_300_bf_scaffold_2_30
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37510..37803
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VDN4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU10922.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
putative sarcosine oxidase subunit alpha
Displaying items 1-30 of 656 in total

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