ggKbase home page

SCNpilot_expt_300_bf_scaffold_38

Search features with annotation key words

Displaying items 1-30 of 166 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_38_1
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..186)
DNA (186bp) protein (62aa)
Electron transfer flavodomain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WY04_9SPHN
Electron transfer flavoprotein subunit beta {ECO:0000313|EMBL:GAM01058.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" so
electron transfer flavoprotein subunit beta
SCNpilot_expt_300_bf_scaffold_38_2
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(205..1164)
DNA (960bp) protein (320aa)
2-dehydropantoate 2-reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase {ECO:0000313|EMBL:ACS64500.1}; EC=1.1.1.169 {ECO:0000313|EMBL:ACS64500.1};; Flags: Precursor;; TaxID=428406 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkhol
2-dehydropantoate 2-reductase n=1 Tax=Ralstonia pickettii (strain 12D) RepID=C6BHC6_RALP1
SCNpilot_expt_300_bf_scaffold_38_3
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1333..2139
DNA (807bp) protein (269aa)
2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC:4.1.1.77)
2-oxo-hepta-3-ene-1,7-dioic acid hydratase n=1 Tax=Caulobacter sp. AP07 RepID=J2GKU6_9CAUL
2-oxo-hepta-3-ene-1,7-dioic acid hydratase {ECO:0000313|EMBL:EJL30775.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source
SCNpilot_expt_300_bf_scaffold_38_4
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2165..3637
DNA (1473bp) protein (491aa)
betaine-aldehyde dehydrogenase (EC:1.2.1.8)
Betaine-aldehyde dehydrogenase {ECO:0000313|EMBL:ADX46915.1}; EC=1.2.1.8 {ECO:0000313|EMBL:ADX46915.1};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonada
betaine-aldehyde dehydrogenase n=1 Tax=Acidovorax radicis RepID=UPI0002377834 rbh
SCNpilot_expt_300_bf_scaffold_38_5
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3634..4500
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HH11_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB11413.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lac
extradiol ring-cleavage dioxygenase
SCNpilot_expt_300_bf_scaffold_38_6
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4505..5404
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IP53_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB11414.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lac
5-carboxymethyl-2-hydroxymuconate isomerase
SCNpilot_expt_300_bf_scaffold_38_7
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5404..6810
DNA (1407bp) protein (469aa)
D-lactate dehydrogenase (EC:1.1.2.4)
D-lactate dehydrogenase (Cytochrome) {ECO:0000313|EMBL:ADX46914.1}; EC=1.1.2.4 {ECO:0000313|EMBL:ADX46914.1};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Coma
D-lactate dehydrogenase (Cytochrome) n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q5V2_ACIAP rbh
SCNpilot_expt_300_bf_scaffold_38_8
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6779..7699)
DNA (921bp) protein (307aa)
LysR family transcriptional regulator n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00036B3D59
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EDZ97954.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Bur
LysR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_38_9
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7730..9130)
DNA (1401bp) protein (467aa)
FAD-linked oxidase n=1 Tax=Cupriavidus sp. WS RepID=UPI00037B352A
FAD-linked oxidase {ECO:0000313|EMBL:KGM33165.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP
putative oxidoreductase
SCNpilot_expt_300_bf_scaffold_38_10
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9186..12059)
DNA (2874bp) protein (958aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI0002DB79BA rbh
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ABQ68650.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" sour
SCNpilot_expt_300_bf_scaffold_38_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12124..13116)
DNA (993bp) protein (331aa)
Metallo-beta-lactamase superfamily protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XIU4_VARPD
metallo-beta-lactamase superfamily protein
Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:AGU52244.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
SCNpilot_expt_300_bf_scaffold_38_12
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13406..14734
DNA (1329bp) protein (443aa)
major facilitator superfamily permease; K08195 MFS transporter, AAHS family, 4-hydroxybenzoate transporter id=12554345 bin=CNBR_ACIDO species=Herbaspirillum sp. GW103 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
4-hydroxybenzoate transporter {ECO:0000313|EMBL:EYF07251.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Ch
major facilitator transporter
SCNpilot_expt_300_bf_scaffold_38_13
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14804..15571
DNA (768bp) protein (256aa)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YRK7_9PROT
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase {ECO:0000313|EMBL:EKN01442.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" s
hpaI2; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
SCNpilot_expt_300_bf_scaffold_38_14
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15594..17021
DNA (1428bp) protein (476aa)
Putative aldehyde dehydrogenase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EFM7_9SPHN rbh
aldehyde dehydrogenase
Putative aldehyde dehydrogenase {ECO:0000313|EMBL:EHJ59898.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Nov
SCNpilot_expt_300_bf_scaffold_38_15
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17005..17886
DNA (882bp) protein (294aa)
esterase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B37CCD
Esterase/lipase {ECO:0000313|EMBL:KEZ18369.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (S
esterase/lipase-like protein
SCNpilot_expt_300_bf_scaffold_38_16
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17916..18542)
DNA (627bp) protein (209aa)
Transcriptional regulator TetR n=1 Tax=Acetobacter tropicalis NBRC 101654 RepID=F7VC76_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AHE53636.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
TetR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_38_17
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18582..19355)
DNA (774bp) protein (258aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphing
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Sphingobium lactosutens DS20 RepID=T0J424_9SPHN rbh
short-chain dehydrogenase
SCNpilot_expt_300_bf_scaffold_38_18
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19352..20551)
DNA (1200bp) protein (400aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphapr
Acetate kinase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GCE5_9SPHN rbh
ackA; acetate kinase
SCNpilot_expt_300_bf_scaffold_38_19
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20548..21975)
DNA (1428bp) protein (476aa)
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HQ54_9SPHN rbh
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase {ECO:0000313|EMBL:AHE53632.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; S
phosphate butyryltransferase
SCNpilot_expt_300_bf_scaffold_38_20
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21975..23729)
DNA (1755bp) protein (585aa)
Poly-beta-hydroxybutyrate polymerase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIZ1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE53631.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
poly-beta-hydroxybutyrate polymerase
SCNpilot_expt_300_bf_scaffold_38_21
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23726..25222)
DNA (1497bp) protein (499aa)
NodT family efflux transporter, outer membrane factor (OMF) lipoprotein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CY33_SPHYA rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE53630.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
RND efflux system outer membrane lipoprotein
SCNpilot_expt_300_bf_scaffold_38_22
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25219..26346)
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00035CBF7D rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE53629.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
ABC-2 precursor rbh
SCNpilot_expt_300_bf_scaffold_38_23
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26343..29084)
DNA (2742bp) protein (914aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037F31C7 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE53628.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
ABC-type multidrug transport system, permease component
SCNpilot_expt_300_bf_scaffold_38_24
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29093..30079)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9DE90_SPHYA rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE53627.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
HlyD family secretion protein
SCNpilot_expt_300_bf_scaffold_38_25
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30543..31973)
DNA (1431bp) protein (477aa)
Scaffold6, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32115.1}; EC=1.2.7.8 {ECO:0000313|EMBL:KIS32115.1};; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadale
putative indolepyruvate oxidoreductase subunit B (EC:1.2.7.8)
Indolepyruvate oxidoreductase subunit B n=1 Tax=Sphingomonas sp. LH128 RepID=J8SLQ7_9SPHN rbh
SCNpilot_expt_300_bf_scaffold_38_26
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31986..34118)
DNA (2133bp) protein (711aa)
indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8) rbh
Indolepyruvate ferredoxin oxidoreductase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VU66_9SPHN rbh
Indolepyruvate ferredoxin oxidoreductase {ECO:0000313|EMBL:EZP72758.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source=
SCNpilot_expt_300_bf_scaffold_38_27
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34125..34895)
DNA (771bp) protein (257aa)
Cyclase family protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8W3B5_9SPHN rbh
Cyclase family protein {ECO:0000313|EMBL:EZP72759.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas pauc
cyclase family protein
SCNpilot_expt_300_bf_scaffold_38_28
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34984..35448
DNA (465bp) protein (155aa)
MarR family transcriptional regulator n=1 Tax=Sphingomonas sp. LH128 RepID=J8VN78_9SPHN
MarR family transcriptional regulator {ECO:0000313|EMBL:EZP72760.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sp
MarR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_38_29
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35523..37826
DNA (2304bp) protein (768aa)
Salicylyl-CoA 5-hydroxylase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VD04_9SPHN rbh
Scaffold6, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32119.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
salicylyl-CoA 5-hydroxylase
SCNpilot_expt_300_bf_scaffold_38_30
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37838..38242
DNA (405bp) protein (135aa)
Thioesterase superfamily protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1XWF3_9PROT
Thioesterase superfamily protein {ECO:0000313|EMBL:EZP72763.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingo
thioesterase
Displaying items 1-30 of 166 in total

View Taxonomy