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SCNpilot_expt_300_bf_scaffold_62

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Displaying items 1-30 of 181 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_62_1
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2144..2905)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C8EA
Uncharacterized protein {ECO:0000313|EMBL:EQB04986.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp.
replication protein A
SCNpilot_expt_300_bf_scaffold_62_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3193..5499)
DNA (2307bp) protein (769aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000376C02A
TonB-dependent receptor {ECO:0000313|EMBL:GAO55581.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
TonB-dependent receptor
SCNpilot_expt_300_bf_scaffold_62_3
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5773..7263)
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MM91_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:CCW16603.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium jap
hypothetical protein
SCNpilot_expt_300_bf_scaffold_62_4
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7336..7740)
DNA (405bp) protein (135aa)
dethiobiotin synthase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B516E6
Bacteriophytochrome cph2 {ECO:0000313|EMBL:EXI79034.1}; TaxID=1454003 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-92.;"
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_expt_300_bf_scaffold_62_5
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7694..9295)
DNA (1602bp) protein (534aa)
dethiobiotin synthase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B516E6 rbh
Uncharacterized protein {ECO:0000313|EMBL:EAV45968.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata
diguanylate cyclase/phosphodiesterase
SCNpilot_expt_300_bf_scaffold_62_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9492..11966)
DNA (2475bp) protein (825aa)
TonB-denpendent receptor n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B551ED rbh
TonB-dependent receptor {ECO:0000313|EMBL:GAO53433.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
TonB-dependent receptor
SCNpilot_expt_300_bf_scaffold_62_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12195..13574)
DNA (1380bp) protein (460aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDX8_9SPHN rbh
Sensor histidine kinase {ECO:0000313|EMBL:GAO53431.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
SCNpilot_expt_300_bf_scaffold_62_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13562..14248)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003609B5F
Sphingomonas taxi strain 30a NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29681.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
two component transcriptional regulator
SCNpilot_expt_300_bf_scaffold_62_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14415..15416
DNA (1002bp) protein (334aa)
LacI family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN45_9SPHN rbh
LacI family transcriptional regulator
LacI family transcriptional regulator {ECO:0000313|EMBL:BAK65493.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sp
SCNpilot_expt_300_bf_scaffold_62_10
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15674..16297)
DNA (624bp) protein (208aa)
TadE-like protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E7P8_9SPHN
pilus assembly protein TadE
TadE-like protein {ECO:0000313|EMBL:EHJ62541.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium p
SCNpilot_expt_300_bf_scaffold_62_11
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16294..16881)
DNA (588bp) protein (196aa)
TadE-like n=2 Tax=Novosphingobium RepID=F6INE4_9SPHN
Pilus assembly protein TadE {ECO:0000313|EMBL:KHK92036.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosph
TadE-like protein
SCNpilot_expt_300_bf_scaffold_62_12
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16881..18797)
DNA (1917bp) protein (639aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5D8_NOVAD rbh
Flp pilus assembly protein TadG {ECO:0000313|EMBL:KHS45621.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novos
hypothetical protein
SCNpilot_expt_300_bf_scaffold_62_13
unknown

Not on your lists

19077..19448
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_62_14
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19584..20786)
DNA (1203bp) protein (401aa)
membrane protein n=2 Tax=Caulobacter RepID=UPI0003688C50 rbh
Putative esterase of the alpha-beta hydrolase superfamily {ECO:0000313|EMBL:EJL30669.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulob
hypothetical protein
SCNpilot_expt_300_bf_scaffold_62_15
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20843..22327)
DNA (1485bp) protein (495aa)
Major facilitator transporter n=1 Tax=Novosphingobium sp. PP1Y RepID=F6INE6_9SPHN rbh
major facilitator superfamily transporter
Major facilitator transporter {ECO:0000313|EMBL:CCA92948.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosp
SCNpilot_expt_300_bf_scaffold_62_16
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22524..23558)
DNA (1035bp) protein (345aa)
LacI family transcriptional regulator n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IM88_9SPHN rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:EQB12885.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="S
LacI family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_62_17
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23798..26590
DNA (2793bp) protein (931aa)
outer membrane insertion C-terminal signal n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5D6A4 rbh
TonB-dependent receptor {ECO:0000313|EMBL:EJK82751.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" sour
signal protein
SCNpilot_expt_300_bf_scaffold_62_18
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26663..28183
DNA (1521bp) protein (507aa)
tryptophan halogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B2E953 rbh
Tryptophan halogenase {ECO:0000313|EMBL:EZP56977.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp.
tryptophan halogenase
SCNpilot_expt_300_bf_scaffold_62_19
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28198..29979
DNA (1782bp) protein (594aa)
UPI0003D5F14D related cluster n=1 Tax=unknown RepID=UPI0003D5F14D rbh
Alpha-amylase {ECO:0000313|EMBL:ETI63183.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
alpha-amylase
SCNpilot_expt_300_bf_scaffold_62_20
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29992..31596
DNA (1605bp) protein (535aa)
alpha-glucosidase (EC:3.2.1.20)
Alpha-amylase family protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAZ8_9SPHN rbh
Alpha-amylase family protein {ECO:0000313|EMBL:EGD58224.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosph
SCNpilot_expt_300_bf_scaffold_62_21
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31626..33674
DNA (2049bp) protein (683aa)
alpha-glucosidase (EC:3.2.1.20)
Alpha-glucosidase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAZ9_9SPHN rbh
Alpha-glucosidase {ECO:0000313|EMBL:EGD58223.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium ni
SCNpilot_expt_300_bf_scaffold_62_22
R_Brevundimonas_68_13, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33721..34797
DNA (1077bp) protein (359aa)
pyridoxal-5'-phosphate-dependent protein subunit beta; K01738 cysteine synthase A [EC:2.5.1.47] Tax=RIFCSPHIGHO2_12_FULL_Brevundimonas_68_13_curated
cysteine synthase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B74A5A rbh
pyridoxal-5'-phosphate-dependent protein subunit beta
SCNpilot_expt_300_bf_scaffold_62_23
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34832..36838
DNA (2007bp) protein (669aa)
Oligopeptidase A {ECO:0000313|EMBL:CCW16390.1}; EC=3.4.24.70 {ECO:0000313|EMBL:CCW16390.1};; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae;
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002D860EA rbh
oligopeptidase A
SCNpilot_expt_300_bf_scaffold_62_24
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36904..37917
DNA (1014bp) protein (338aa)
(S)-2-hydroxy-acid oxidase (EC:1.1.3.15); K00104 glycolate oxidase [EC:1.1.3.15] Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
FMN-dependent alpha-hydroxy acid dehydrogenase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BB43_PARDP
FMN-dependent alpha-hydroxy acid dehydrogenase
SCNpilot_expt_300_bf_scaffold_62_25
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37919..38602
DNA (684bp) protein (228aa)
PKHD-type hydroxylase C664_18854 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales;
PKHD-type hydroxylase C664_18854 n=1 Tax=Thauera sp. 63 RepID=N6WZP4_9RHOO
putative hydroxylase
SCNpilot_expt_300_bf_scaffold_62_26
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38622..39263
DNA (642bp) protein (214aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZB26_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EGD58107.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
hypothetical protein
SCNpilot_expt_300_bf_scaffold_62_27
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39363..40532
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI00037973E1 rbh
Uncharacterized protein {ECO:0000313|EMBL:KHS42958.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobi
hypothetical protein
SCNpilot_expt_300_bf_scaffold_62_28
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40643..42583
DNA (1941bp) protein (647aa)
potassium transporter Kup n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B30529 rbh
K+ potassium transporter
Probable potassium transport system protein kup 2 {ECO:0000255|HAMAP-Rule:MF_01522}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphin
SCNpilot_expt_300_bf_scaffold_62_29
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42602..43999
DNA (1398bp) protein (466aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G871_NOVAD rbh
periplasmic sensor signal transduction histidine kinase
SCNpilot_expt_300_bf_scaffold_62_30
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43996..44670
DNA (675bp) protein (225aa)
Fis family transcriptional regulator n=1 Tax=Sphingobium sp. YL23 RepID=UPI00039A8A76
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABD25951.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; No
Displaying items 1-30 of 181 in total

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