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SCNpilot_expt_300_bf_scaffold_139_1

Organism: SCNPILOT_EXPT_300_BF_Novosphingobium_63_58

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 ASCG 11 / 38
Location: 145..849

Top 3 Functional Annotations

Value Algorithm Source
Type-F conjugative transfer system pilin assembly protein TrbC n=1 Tax=Novosphingobium sp. AP12 RepID=J3AAG8_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 41.3
  • Coverage: 247.0
  • Bit_score: 180
  • Evalue 2.70e-42
Type-F conjugative transfer system pilin assembly protein TrbC {ECO:0000313|EMBL:EJL28349.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; similarity UNIPROT
DB: UniProtKB
  • Identity: 41.7
  • Coverage: 247.0
  • Bit_score: 180
  • Evalue 2.30e-42
Type-F conjugative transfer system pilin assembly protein TrbC similarity KEGG
DB: KEGG
  • Identity: 39.3
  • Coverage: 242.0
  • Bit_score: 156
  • Evalue 9.20e-36

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Taxonomy

Novosphingobium sp. AP12 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 705
TTGCTCAGCGCATGTGGTGCGCTCGCTGCACAAACCTTGCCCGATCTCGATCTCAGTCACATTGCGCGGCAGGCCGAGGCAGTCGATGGCGCGACCCAGGCTTTTGTGCATCAACTGCTCGAGAAGATCCCCAAGGGTTATGGGCAGGCGCAAGAGGTCGCGAACGGAGCGCAGGCCCATCAGGTGGGCGCGCCGCTTGCCAGGCTCGCTGCCGGGCTGGACGAGGATCTCGCCGAAGCGATGCAGGCGCCGCTTTCGCCTAGCGTTAAGGCGGGCGGCGCCACCAACGAAACCGGCCTGCTCGCCTTTGCCAGCACCTCCATGCCCGCCGACGCGCTCGAGCGGCTGATCGGTGATGTCACGAAGTCAGGCGGCACGGTGGTGTTTCGCGGCTTTGCGGCCGAGGGGAGTCGGGGTTTCCTTGATGCCCTGCGCAAGGCGGTGCCCGAGGGCAGCGCGGCGCGGGTGGTCATCGATCCGCGGCTGTTCCGCAGCTTCGGGGTCGACGAGGTGCCGACCTATGTCGCCGTCTCGGCGCCGTTCCCGCTTTGCGATCAGCTTGATTGCACGACGACGCCCACGCCCCATGACCGGATCGCGGGCAATGTGACGACCCGTTATGCGCTCGAAACCTTTGTTGAGGGCAAGGGACCGGGCGCCACGCTGGCGGCCCGCGCGCTTCATCACCTGACGGAGCAGCCATGA
PROTEIN sequence
Length: 235
LLSACGALAAQTLPDLDLSHIARQAEAVDGATQAFVHQLLEKIPKGYGQAQEVANGAQAHQVGAPLARLAAGLDEDLAEAMQAPLSPSVKAGGATNETGLLAFASTSMPADALERLIGDVTKSGGTVVFRGFAAEGSRGFLDALRKAVPEGSAARVVIDPRLFRSFGVDEVPTYVAVSAPFPLCDQLDCTTTPTPHDRIAGNVTTRYALETFVEGKGPGATLAARALHHLTEQP*