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SCNpilot_expt_300_bf_scaffold_1225

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1225_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..535)
DNA (534bp) protein (178aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TY60_ALIDB
trap dicarboxylate transporter subunit DctM
Trap dicarboxylate transporter subunit DctM {ECO:0000313|EMBL:GAO20611.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" sourc
SCNpilot_expt_300_bf_scaffold_1225_2
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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766..1002
DNA (237bp) protein (79aa)
Uncharacterised protein {ECO:0000313|EMBL:CRD98547.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
id=12551147 bin=BDI tax=BDI organism_group=Betaproteobacteria
SCNpilot_expt_300_bf_scaffold_1225_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1151..1732)
DNA (582bp) protein (194aa)
Tripartite ATP-independent periplasmic transporter DctQ component n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5H1_ALIDK rbh
Tripartite ATP-independent periplasmic transporter {ECO:0000313|EMBL:GAO26389.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;
TRAP dicarboxylate transporter subunit DctQ rbh
SCNpilot_expt_300_bf_scaffold_1225_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1897..2844
DNA (948bp) protein (316aa)
Regulatory protein LysR n=2 Tax=Alicycliphilus denitrificans RepID=E8TYT6_ALIDB rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:GAO26390.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Ali
LysR family transcriptional regulator rbh
SCNpilot_expt_300_bf_scaffold_1225_5
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3048..3947
DNA (900bp) protein (300aa)
ABC-type transporter, periplasmic subunit family 3 n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5H3_ALIDK rbh
Extracellular solute-binding protein {ECO:0000313|EMBL:GAO26391.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alic
ABC transporter substrate-binding protein rbh
SCNpilot_expt_300_bf_scaffold_1225_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4051..4803
DNA (753bp) protein (251aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5H4_ALIDK rbh
polar amino acid ABC transporter permease rbh
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:AEB83066.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphi
SCNpilot_expt_300_bf_scaffold_1225_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4805..5476
DNA (672bp) protein (224aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5H5_ALIDK rbh
polar amino acid ABC transporter permease rbh
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:AEB83067.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphi
SCNpilot_expt_300_bf_scaffold_1225_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5501..6238
DNA (738bp) protein (246aa)
phosphonate-transporting ATPase (EC:3.6.3.28) rbh
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYU0_ALIDB rbh
Glutamate/aspartate ABC transporter ATP-binding protein GltL {ECO:0000313|EMBL:GAO20564.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicyc
SCNpilot_expt_300_bf_scaffold_1225_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6344..7378)
DNA (1035bp) protein (345aa)
ornithine cyclodeaminase (EC:4.3.1.12) rbh
Ornithine cyclodeaminase n=2 Tax=Alicycliphilus denitrificans RepID=E8TYU1_ALIDB rbh
Ornithine cyclodeaminase {ECO:0000313|EMBL:GAO26395.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus s
SCNpilot_expt_300_bf_scaffold_1225_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7439..8182)
DNA (744bp) protein (248aa)
HAD family hydrolase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000368B3CD
HAD superfamily hydrolase {ECO:0000313|EMBL:GAO26396.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus
HAD superfamily hydrolase
SCNpilot_expt_300_bf_scaffold_1225_11
Physcomitrella patens, Physcomitrella, Funariales, Funariidae, Streptophyta, Viridiplantae

Not on your lists

comp(8706..9458)
DNA (753bp) protein (251aa)
Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U7C5_PHYPA
Displaying 11 items

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