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SCNpilot_expt_300_bf_scaffold_3649

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_3649_1
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..427)
DNA (426bp) protein (142aa)
PfkB family protein carbohydrate kinase (EC:2.7.1.-)
Carbohydrate kinase, PfkB family protein {ECO:0000313|EMBL:AEI05317.1}; EC=2.7.1.- {ECO:0000313|EMBL:AEI05317.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bra
Carbohydrate kinase, PfkB family protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJQ5_OLICO
SCNpilot_expt_300_bf_scaffold_3649_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(624..1040)
DNA (417bp) protein (139aa)
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase n=1 Tax=Rhodovulum sp. PH10 RepID=J6LCE5_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EKS37206.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
histidine triad (HIT) protein
SCNpilot_expt_300_bf_scaffold_3649_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1463..3334
DNA (1872bp) protein (624aa)
DNA polymerase III, subunit gamma and tau n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNM7_AFIFE rbh
DNA polymerase III, subunit gamma and tau {ECO:0000313|EMBL:EKS30721.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia f
DNA polymerase III subunits gamma/tau
SCNpilot_expt_300_bf_scaffold_3649_4
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3357..3677
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002F9B9A4
Nucleoid-associated protein UP10_30100 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source
hypothetical protein
SCNpilot_expt_300_bf_scaffold_3649_5
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3763..4242
DNA (480bp) protein (160aa)
Recombination protein RecR n=2 Tax=Oligotropha carboxidovorans RepID=RECR_OLICO
recR; recombination protein RecR
Recombination protein RecR {ECO:0000255|HAMAP-Rule:MF_00017}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha ca
SCNpilot_expt_300_bf_scaffold_3649_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4263..4646
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3T0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37202.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
SCNpilot_expt_300_bf_scaffold_3649_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4666..6054)
DNA (1389bp) protein (463aa)
Major facilitator superfamily MFS_1 n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21B95_RHOPB rbh
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABD86341.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhod
SCNpilot_expt_300_bf_scaffold_3649_8
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6246..7565)
DNA (1320bp) protein (440aa)
DNA recombinase n=1 Tax=Afipia birgiae RepID=UPI0003670AE9 rbh
DNA recombination protein RmuC {ECO:0000313|EMBL:EGP09827.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium
hypothetical protein
SCNpilot_expt_300_bf_scaffold_3649_9
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7808..8059
DNA (252bp) protein (84aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
def; peptide deformylase (EC:3.5.1.88)
peptide deformylase n=1 Tax=Afipia birgiae RepID=UPI00031AEB27
SCNpilot_expt_300_bf_scaffold_3649_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8140..9141
DNA (1002bp) protein (334aa)
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase {ECO:0000255|HAMAP-Rule:MF_00182}; EC=2.1.2.9 {ECO:0000255|HAMAP-Rule:MF_00182};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bra
Methionyl-tRNA formyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=FMT_NITHX rbh
SCNpilot_expt_300_bf_scaffold_3649_11
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9284..9859
DNA (576bp) protein (192aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridy
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WQZ7_9BRAD
SCNpilot_expt_300_bf_scaffold_3649_12
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9856..9996)
DNA (141bp) protein (47aa)
5'-methylthioadenosine nucleosidase (EC:3.2.2.16)
5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase {ECO:0000313|EMBL:ABA06315.1}; EC=3.2.2.16 {ECO:0000313|EMBL:ABA06315.1};; TaxID=323098 species="Bacteria; Proteobacteria; Alp
5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SN26_NITWN
Displaying 12 items

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