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SCNpilot_expt_300_bf_scaffold_1489

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1489_1
Mycobacterium ulcerans, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(3..326)
DNA (324bp) protein (108aa)
GTP-binding protein n=1 Tax=Mycobacterium marinum MB2 RepID=S7RG66_MYCMR
PE-PGRS family protein
PE-PGRS family protein {ECO:0000313|EMBL:ABL06369.1}; TaxID=362242 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium ulcerans (strain Agy99
SCNpilot_expt_300_bf_scaffold_1489_2
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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400..813
DNA (414bp) protein (138aa)
Transcriptional activator ligand binding domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V143_9BRAD
Transcriptional activator ligand binding domain protein {ECO:0000313|EMBL:EFI53423.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobi
transcription activator, effector binding
SCNpilot_expt_300_bf_scaffold_1489_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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828..1523
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0C6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34876.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1489_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1845..2042)
DNA (198bp) protein (66aa)
membrane protein n=1 Tax=Afipia birgiae RepID=UPI0003640063
Uncharacterized protein {ECO:0000313|EMBL:EKS34875.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
twin-arginine translocation pathway signal
SCNpilot_expt_300_bf_scaffold_1489_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2071..2823)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NW09_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30378.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
twin-arginine translocation pathway signal
SCNpilot_expt_300_bf_scaffold_1489_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3248..4759
DNA (1512bp) protein (504aa)
Signal recognition particle protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2D6_9BRAD rbh
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizob
ffh; signal recognition particle protein Ffh
SCNpilot_expt_300_bf_scaffold_1489_7
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4799..5122
DNA (324bp) protein (108aa)
30S ribosomal protein S16 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NMN4_AFIFE
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53
rpsP; 30S ribosomal protein S16
SCNpilot_expt_300_bf_scaffold_1489_8
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5248..5772
DNA (525bp) protein (175aa)
Ribosome maturation factor RimM n=2 Tax=Oligotropha carboxidovorans RepID=B6JAQ5_OLICO
rimM; 16S rRNA-processing protein RimM
Ribosome maturation factor RimM {ECO:0000313|EMBL:AEI04979.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha c
SCNpilot_expt_300_bf_scaffold_1489_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5872..6666
DNA (795bp) protein (265aa)
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltrans
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VJ04_RHOPX rbh
SCNpilot_expt_300_bf_scaffold_1489_10
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6770..7153
DNA (384bp) protein (128aa)
50S ribosomal protein L19 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V150_9BRAD
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.
rplS; 50S ribosomal protein L19
SCNpilot_expt_300_bf_scaffold_1489_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7380..7790)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJ94_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30372.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
glyoxalase family protein
SCNpilot_expt_300_bf_scaffold_1489_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7930..9240
DNA (1311bp) protein (437aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM i
leuC; isopropylmalate isomerase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QHQ0_9BRAD rbh
Displaying 12 items

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