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SCNpilot_expt_300_bf_scaffold_6846_3

Organism: SCNPILOT_EXPT_300_BF_Afipia_64_5_fragment

partial RP 36 / 55 MC: 3 BSCG 39 / 51 MC: 4 ASCG 9 / 38
Location: comp(1032..3593)

Top 3 Functional Annotations

Value Algorithm Source
Hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter n=1 Tax=Afipia felis ATCC 53690 RepID=K8NCL8_AFIFE similarity UNIREF
DB: UNIREF100
  • Identity: 83.1
  • Coverage: 805.0
  • Bit_score: 1279
  • Evalue 0.0
  • rbh
Hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter {ECO:0000313|EMBL:EKS28317.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia. similarity UNIPROT
DB: UniProtKB
  • Identity: 83.0
  • Coverage: 805.0
  • Bit_score: 1278
  • Evalue 0.0
mdtC2; multidrug resistance protein MdtC similarity KEGG
DB: KEGG
  • Identity: 76.4
  • Coverage: 861.0
  • Bit_score: 1248
  • Evalue 0.0

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Taxonomy

Afipia felis → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2562
GTGTCGATCTCCGAACCCTTCATTCGAAGGCCGGTCGCCACCACACTGCTTGCGATCGGCCTGTTCCTGGTCGGCGCGGTCGCCTACGTCAACCTGCCGGTCGCGAGCCTGCCGAACGTCGACTTCCCGGCGATCTTCGTATCGTCGACCCGTCCCGGCGCCAGCCCGTCGGTGATGGCCGCGACCGTGGCCGCGCCGCTGGAGCGGCGGCTTGGGGAAATCGCCGGCATCGACCAGATCACTTCGACCAGTTCGCTCGGCACCAGCAATATCCAGTTGCAGTTCGCCATCGGCCGCAGCATCGACAAGGCCGCGCGCGGCGTGCAGGCGGCGATCAACGCATCGCTCTCCGACCTGCCGACCGATCTTCCGACGCTGCCGAATTTCCGCAAGGCCAATCCGTCCGCCGCGCCGGTGTTCATCATCGCGCTGACGTCGAAAACGATGTCGTCGAGCGCGATCTATGACGTCGCCGACACCGTGGTCGCCCAGCGCCTCGCGCAGGTGCGGGGGGTCGGCGAGGTGACGGTGAGCGGCGCCGACCAGCCGGCGGTTCGGGTCCAGCTCAACCCGGTGCTGCTCGCCGCGGCCGGGCTCTCCACCGAAGCGGTGCGCACCGCGATCGTCAACGCCAACGCCATCGGCCCGATCGGCACCTTCAACGGCGCGCGGCGGGGCGAGACCCTCGGCCTCAATCCGCAGATGCGCACCGCCGCCGAGTTCAAAAACATCATCGTCCAGTCGTCGAACGGCAATTTCCTGCGCCTGTCGGATGTCGCGACGGTGATCGACGCGACCCGCTCCAGCCGCTCGATTGCGTGGTTCAACAAGCAACCTGCGGTGCTGCTGCAAATCACCAAGCAGGGCGATGCCAACGTGCTCGACACGGTGGACCGCATCAAGGCGCTGCTGCCGCAACTCAAGCGATGGATTCCGGCGGGCGTGGAAATTTCGGTGCTGACCGACCGCACCGGCACCATCCGCGCCAGTGTCGAGGACATGCAGTTCACGCTGGCCGCCACCTGCGTGCTGGTGATGCTCGTGGTGTTCCTGTTCCTGCGCCGCATGACGCCGACCATCGCGGCCGGTATTTCCGTTCCGCTGGCGCTGGCCGGCACCTGCGCCGGAATGTGGGTGGCGGGGTATTCGATCAACAACCTGACGCTGATGGCGCTGGCGATCTCGATCGGATTCGTGGTCGATGACGCTATCGTCATGATCGAGAACATGTATCGGAATCTCGAGCATGGCATGCGGCCGTATCAGGCCGCCTTGCAGGGCGCGCGGCAGATCGGTTTCACAGTGCTTTCCATCAGCCTGTCGCTGGTCGCGGCGTTCACGCCGCTGATCTTCATGGAAGGCATCGTCGGCCGGCTGCTGCGCGAATTCTCGATGACCCTGGTGTTCGCCATCGCCGTCTCCACCGTGGTGTCGCTGACCATCACGCCGATGATCTGCGCGCACTATATCAAGGGCGCGATTTCAACCAACGAGACCTGGTTCGACCGGGTGGTGGAAGGCGCGCTGTCGCGCATCCTGACATTCTACGAGCGCACGCTGCATGTGGTGCTGCGATTTCCGTTCGCGACCCTGCTGGTGTTCTTCGCCACCATCGCGCTCACCGTGGTGATGTTCGCCAAGATGCCGAAGGGCTATTTCCCGACCGACGACAGCGGCTTCATCTTCGGCTCGACCCGGGCGTCGGCCGACATCTCGTTCCAGGCGATGCGTGAGCTGCAACAGCGTGTCGCCGATGTGGTGATGGCGGACCCCGCGGTCGCGGCCATCGGATCGAGCCTCGGCGGCGGCGGTCCGGGAGGCGGCGGCTCCAACCGCGGCACCATGTTCATTTCGCTGAAGCCTGTCGACGAGCGTGACGGCCTGTCCACCACGCTGGTGATCGACCGGCTGCGCCGCGAGCTTGGCAAGATTCCCGGCATCCGCCTGTTCATGGTGGCGGCGCAGGACATTCGCGCCGGCGGACGGCAGAGCGATTCCGACTATCAGTACACGCTGGTCAGCGCCGATCTCGATCTGCTGCAGAAATGGGCGCCGATTGTCGCCAAGCATATGGAAACCGTCGAAGGCATCACCGACATCTCCAGCGACAGCGATACCGCCGGCCTGCAGCTCAATCTGAGCATCGACCGCAGCATGGCCTCCAGCCTCGGCGTCGATGTGCAGGACATCGACAACGCGCTCAACAATGCGTTCTCGCAGCGGCAGATTTCGATCGTCTACACCCAGCGTAACCAGTATCAGGTGGTGCTGGAGGTCGATCCGAAATTCCAGGACGATCCCGCCGATCTCGCGCACATCTATGTCAATGGCGCCAACATCGTTCCCCTCGACCACGGTGTCGTTCAACCTCTTGCCGAACGTGCCGCTGGAGACCGCGACCGCGAACATCCAGCAGGCGGTCGCCGAACTGCATATGCCCGAAGGCATCCGCGGCAATTTCGAGGGCAACGCCGCCGACAGCCGCAAGACCGCCGGACGCCAGCCGTTGCTGATCCTGGGTGTGCTGGTCGCGGTCTACATCGTGCTCGGCGTGCTCTATGA
PROTEIN sequence
Length: 854
VSISEPFIRRPVATTLLAIGLFLVGAVAYVNLPVASLPNVDFPAIFVSSTRPGASPSVMAATVAAPLERRLGEIAGIDQITSTSSLGTSNIQLQFAIGRSIDKAARGVQAAINASLSDLPTDLPTLPNFRKANPSAAPVFIIALTSKTMSSSAIYDVADTVVAQRLAQVRGVGEVTVSGADQPAVRVQLNPVLLAAAGLSTEAVRTAIVNANAIGPIGTFNGARRGETLGLNPQMRTAAEFKNIIVQSSNGNFLRLSDVATVIDATRSSRSIAWFNKQPAVLLQITKQGDANVLDTVDRIKALLPQLKRWIPAGVEISVLTDRTGTIRASVEDMQFTLAATCVLVMLVVFLFLRRMTPTIAAGISVPLALAGTCAGMWVAGYSINNLTLMALAISIGFVVDDAIVMIENMYRNLEHGMRPYQAALQGARQIGFTVLSISLSLVAAFTPLIFMEGIVGRLLREFSMTLVFAIAVSTVVSLTITPMICAHYIKGAISTNETWFDRVVEGALSRILTFYERTLHVVLRFPFATLLVFFATIALTVVMFAKMPKGYFPTDDSGFIFGSTRASADISFQAMRELQQRVADVVMADPAVAAIGSSLGGGGPGGGGSNRGTMFISLKPVDERDGLSTTLVIDRLRRELGKIPGIRLFMVAAQDIRAGGRQSDSDYQYTLVSADLDLLQKWAPIVAKHMETVEGITDISSDSDTAGLQLNLSIDRSMASSLGVDVQDIDNALNNAFSQRQISIVYTQRNQYQVVLEVDPKFQDDPADLAHIYVNGANIVPLDHGVVQPLAERAAGDRDREHPAGGRRTAYARRHPRQFRGQRRRQPQDRRTPAVADPGCAGRGLHRARRAL*