ggKbase home page

SCNpilot_expt_300_bf_scaffold_2727_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_2727_curated_1
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..152)
DNA (150bp) protein (50aa)
Putative Cysteine--tRNA ligase {ECO:0000313|EMBL:CCM65027.1}; EC=6.1.1.16 {ECO:0000313|EMBL:CCM65027.1};; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
Putative Cysteine--tRNA ligase n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z718_9ACTN
mshC; cysteine--1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC
SCNpilot_expt_300_bf_scaffold_2727_curated_2
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(178..882)
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Candidatus Microthrix parvicella RepID=UPI00036C2A38
Putative F420-dependent NADP reductase {ECO:0000313|EMBL:CCM65026.1}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
putative NADPH-dependent F420 reductase
SCNpilot_expt_300_bf_scaffold_2727_curated_3
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(929..2860)
DNA (1932bp) protein (644aa)
glycogen debranching enzyme GlgX; K02438 glycogen operon protein GlgX [EC:3.2.1.-]
Glycogen debranching protein GlgX n=1 Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2HBF8_9RHOB
Glycogen debranching enzyme {ECO:0000313|EMBL:AKF03796.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
SCNpilot_expt_300_bf_scaffold_2727_curated_4
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2869..3147)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z3B4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCM63771.1}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_2727_curated_5
BJP_IG2069_Chloroflexi_70_12, Chloroflexi, Bacteria

Not on your lists

comp(3290..4084)
DNA (795bp) protein (265aa)
ABC transporter ATP-binding protein n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5AU21_9ACTN
ABC transporter ATP-binding protein
Tax=BJP_IG2069_Chloroflexi_70_12
SCNpilot_expt_300_bf_scaffold_2727_curated_6
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(4054..4788)
DNA (735bp) protein (245aa)
NMT1/THI5 like domain protein n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F8A0L2_CELGA
NMT1/THI5 like domain protein; K15598 putative hydroxymethylpyrimidine transport system substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:BAN04551.1}; TaxID=1313172 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
SCNpilot_expt_300_bf_scaffold_2727_curated_7
unknown

Not on your lists

5139..5270
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2727_curated_8
unknown

Not on your lists

5280..5477
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2727_curated_9
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5843..6136)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SEB5_GEOOG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB74587.1}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
SCNpilot_expt_300_bf_scaffold_2727_curated_10
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6133..6885)
DNA (753bp) protein (251aa)
thiamine pyrophosphokinase; K00949 thiamine pyrophosphokinase [EC:2.7.6.2]
hypothetical protein n=1 Tax=Candidatus Microthrix parvicella RepID=UPI00036A1FCB
Thiamine pyrophosphokinase {ECO:0000313|EMBL:EXG80914.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
SCNpilot_expt_300_bf_scaffold_2727_curated_11
Streptomyces turgidiscabies, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7039..8199)
DNA (1161bp) protein (387aa)
esterase n=1 Tax=Streptomyces somaliensis RepID=UPI000299F3BC
Esterase family protein {ECO:0000313|EMBL:ELP67052.1}; TaxID=698760 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces turgidiscabies Car8.;"
Beta-lactamase
SCNpilot_expt_300_bf_scaffold_2727_curated_12
unknown

Not on your lists

comp(8196..8588)
DNA (393bp) protein (131aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2727_curated_13
unknown

Not on your lists

10214..10462
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2727_curated_14
unknown

Not on your lists

10475..11068
DNA (594bp) protein (198aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2727_curated_15
Mycobacterium gilvum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11118..12782
DNA (1665bp) protein (555aa)
spermidine/putrescine ABC transporter ATP-binding subunit; K11072 spermidine/putrescine transport system ATP-binding protein [EC:3.6.3.31]
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=350054 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium gilvum (strain PYR-GCK) (Mycobacterium flavescens; (strain ATCC 700033 / PYR-GCK)).;"
Spermidine/putrescine ABC transporter ATP-binding subunit n=1 Tax=Mycobacterium sp. (strain Spyr1) RepID=E6TI94_MYCSR
Displaying 15 items

View Taxonomy