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SCNpilot_expt_300_bf_scaffold_960_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_960_curated_1
Tetrasphaera elongata, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1..966
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Sporichthya polymorpha RepID=UPI00035DCA9F
Uncharacterized protein {ECO:0000313|EMBL:CCH68785.1}; TaxID=1193181 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera elongata Lp2.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_960_curated_2
marine actinobacterium MedAcidi-G2B, Actinobacteria, Actinobacteria, Bacteria

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comp(1000..1719)
DNA (720bp) protein (240aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1550401 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G2B.;"
signal peptidase I (EC:3.4.21.89)
hypothetical protein n=1 Tax=Candidatus Microthrix parvicella RepID=UPI00037CAE7E
SCNpilot_expt_300_bf_scaffold_960_curated_3
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

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comp(1731..2711)
DNA (981bp) protein (327aa)
Putative Transcriptional regulator-like protein n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z1H3_9ACTN
Putative Transcriptional regulator-like protein {ECO:0000313|EMBL:CCM64520.1}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
hypothetical protein; K13573 proteasome accessory factor C
SCNpilot_expt_300_bf_scaffold_960_curated_4
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

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comp(2708..3640)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z5C6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCM64521.1}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
pafB; putative proteasome accessory factor B
SCNpilot_expt_300_bf_scaffold_960_curated_5
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3643..4662)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z6G1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCM64522.1}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_960_curated_6
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(4672..6030)
DNA (1359bp) protein (453aa)
pafA; Pup--protein ligase (EC:6.3.2.-)
Pup--protein ligase {ECO:0000256|HAMAP-Rule:MF_02111, ECO:0000256|SAAS:SAAS00018320}; EC=6.3.2.n2 {ECO:0000256|HAMAP-Rule:MF_02111, ECO:0000256|SAAS:SAAS00018320};; Proteasome accessory factor A {ECO:0000256|HAMAP-Rule:MF_02111}; Pup-conjugating enzyme {ECO:0000256|HAMAP-Rule:MF_02111}; TaxID=1313172 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
Pup--protein ligase n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A3D5_9ACTN
SCNpilot_expt_300_bf_scaffold_960_curated_7
Actinoplanes sp. SE50/110, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(6098..6739)
DNA (642bp) protein (214aa)
Putative uncharacterized protein n=1 Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8SB05_ACTS5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV81385.1}; TaxID=134676 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110).;"
SCNpilot_expt_300_bf_scaffold_960_curated_8
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6820..7506)
DNA (687bp) protein (229aa)
Proteasome endopeptidase complex {ECO:0000256|SAAS:SAAS00019094}; EC=3.4.25.1 {ECO:0000256|SAAS:SAAS00019094};; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
prcA; 20S proteasome alpha-type subunit (EC:3.4.25.1)
Proteasome subunit alpha (Modular protein) n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z0R5_9ACTN
SCNpilot_expt_300_bf_scaffold_960_curated_9
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7503..8288)
DNA (786bp) protein (262aa)
Proteasome endopeptidase complex {ECO:0000256|SAAS:SAAS00017564}; EC=3.4.25.1 {ECO:0000256|SAAS:SAAS00017564};; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
prcB; 20S proteasome beta-type subunit (EC:3.4.25.1)
Proteasome subunit beta n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z1H8_9ACTN
SCNpilot_expt_300_bf_scaffold_960_curated_10
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(8307..8501)
DNA (195bp) protein (65aa)
Prokaryotic ubiquitin-like protein Pup n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5ANX2_9ACTN
pup; prokaryotic ubiquitin-like protein Pup
Prokaryotic ubiquitin-like protein Pup {ECO:0000313|EMBL:BAN02920.1}; TaxID=1313172 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
SCNpilot_expt_300_bf_scaffold_960_curated_11
marine actinobacterium MedAcidi-G3, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8514..9029)
DNA (516bp) protein (172aa)
hypothetical protein; K13571 proteasome accessory factor A [EC:6.3.2.-]
Putative uncharacterized protein n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7LYP5_ACIFD
Pup deamidase/depupylase {ECO:0000313|EMBL:KIE53804.1}; TaxID=1550402 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G3.;"
Displaying 11 items

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