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SCNpilot_expt_300_bf_scaffold_1828_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1828_curated_1
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

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3..401
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z761_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCM65931.1}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
putative amidohydrolase
SCNpilot_expt_300_bf_scaffold_1828_curated_2
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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624..1217
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Catelliglobosispora koreensis RepID=UPI0003645DB1
Micromonospora carbonacea strain JXNU-1 contig1, whole genome shotgun sequence {ECO:0000313|EMBL:KIR64354.1}; TaxID=47853 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
zinc-binding CMP/dCMP deaminase
SCNpilot_expt_300_bf_scaffold_1828_curated_3
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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1309..1812
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000369E343
Appr-1-p processing protein
Appr-1-p processing domain protein {ECO:0000313|EMBL:ACY17733.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
SCNpilot_expt_300_bf_scaffold_1828_curated_4
Nocardia nova, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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2524..3549
DNA (1026bp) protein (342aa)
alpha-ketoglutarate-dependent taurine dioxygenase (EC:1.14.11.17); K03119 taurine dioxygenase [EC:1.14.11.17]
hypothetical protein n=1 Tax=Nocardia sp. BMG111209 RepID=UPI00037D9451
Taurine dioxygenase TauD-like protein {ECO:0000313|EMBL:AHH19334.1}; TaxID=1415166 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia nova SH22a.;"
SCNpilot_expt_300_bf_scaffold_1828_curated_5
unknown

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comp(3524..3676)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1828_curated_6
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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3922..4431
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Nocardia sp. BMG111209 RepID=UPI0003619E92
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein {ECO:0000313|EMBL:AGZ38961.1}; TaxID=1246995 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
SCNpilot_expt_300_bf_scaffold_1828_curated_7
unknown

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comp(4465..5007)
DNA (543bp) protein (181aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1828_curated_8
unknown

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5085..5243
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1828_curated_9
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

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5372..6823
DNA (1452bp) protein (484aa)
Putative aldehyde dehydrogenase {ECO:0000313|EMBL:CCM62568.1}; EC=1.2.1.- {ECO:0000313|EMBL:CCM62568.1};; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
Putative aldehyde dehydrogenase n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4YWW0_9ACTN
aldehyde dehydrogenase
SCNpilot_expt_300_bf_scaffold_1828_curated_10
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

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7078..8148
DNA (1071bp) protein (357aa)
alcohol dehydrogenase GroES domain-containing protein; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
Putative alcohol dehydrogenase n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z5Q7_9ACTN
Putative alcohol dehydrogenase {ECO:0000313|EMBL:CCM63912.1}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
SCNpilot_expt_300_bf_scaffold_1828_curated_11
Streptomyces leeuwenhoekii, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(8158..8541)
DNA (384bp) protein (128aa)
Serine phosphatase n=1 Tax=Streptomyces sp. SPB74 RepID=D6M351_9ACTO
Regulatory Protein {ECO:0000313|EMBL:CQR62555.1}; TaxID=1437453 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces leeuwenhoekii.;"
regulatory protein
SCNpilot_expt_300_bf_scaffold_1828_curated_12
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

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comp(8659..10272)
DNA (1614bp) protein (538aa)
hypothetical protein n=1 Tax=Candidatus Microthrix parvicella RepID=UPI000362A231
ATP-binding protein of ABC transporter {ECO:0000313|EMBL:CCM63387.1}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial
Displaying 12 items

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