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SCNpilot_expt_300_bf_scaffold_2250_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_2250_curated_1
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(3..434)
DNA (432bp) protein (144aa)
Transcriptional regulator, TetR family n=1 Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PLX2_KRIFD
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ADB32552.1}; TaxID=479435 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
SCNpilot_expt_300_bf_scaffold_2250_curated_2
unknown

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comp(885..1052)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2250_curated_3
unknown

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comp(1068..1304)
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2250_curated_4
unknown

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1592..1891
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2250_curated_5
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(1896..2789)
DNA (894bp) protein (298aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01PE8_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ88472.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_expt_300_bf_scaffold_2250_curated_6
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2856..3380
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI00036FCD05
Uncharacterized protein {ECO:0000313|EMBL:EWT00656.1}; TaxID=1386089 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_2250_curated_7
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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3377..4309
DNA (933bp) protein (311aa)
Esterase/lipase n=1 Tax=uncultured bacterium RepID=D8V1I8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AHH99338.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
SCNpilot_expt_300_bf_scaffold_2250_curated_8
Streptomyces ambofaciens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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5002..5397
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI00036F372F
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=278992 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ambofaciens ATCC 23877.;"
SCNpilot_expt_300_bf_scaffold_2250_curated_9
Mycobacterium vaccae, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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5394..6053
DNA (660bp) protein (220aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Mycobacterium vaccae ATCC 25954 RepID=K0VIA1_MYCVA
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EJZ10829.1}; TaxID=1194972 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium vaccae ATCC 25954.;"
narL; nitrate/nitrite response regulator protein NarL
SCNpilot_expt_300_bf_scaffold_2250_curated_10
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(6103..6864)
DNA (762bp) protein (254aa)
RNA polymerase sigma factor SigF n=1 Tax=Actinopolyspora halophila RepID=UPI00035FB4DC
RNA polymerase sigma-B factor {ECO:0000313|EMBL:EWM11634.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
sig1; RNA polymerase sigma factor; K03090 RNA polymerase sigma-B factor
SCNpilot_expt_300_bf_scaffold_2250_curated_11
Staphylococcus simiae, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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7354..7545
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Staphylococcus simiae CCM 7213 RepID=G5JGM0_9STAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ08672.1}; TaxID=911238 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus simiae CCM 7213.;"
SCNpilot_expt_300_bf_scaffold_2250_curated_12
Cellulomonas bogoriensis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(7628..8083)
DNA (456bp) protein (152aa)
chemotaxis protein CheY n=1 Tax=Promicromonospora sukumoe RepID=UPI00036D62BE
Chemotaxis protein CheY {ECO:0000313|EMBL:KGM13306.1}; TaxID=1386082 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas bogoriensis 69B4 = DSM 16987.;"
response regulator receiver protein
SCNpilot_expt_300_bf_scaffold_2250_curated_13
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8080..9702)
DNA (1623bp) protein (541aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=102897 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
histidine kinase n=1 Tax=Frankia sp. BMG5.12 RepID=UPI000363DBE6
multi-sensor signal transduction histidine kinase
SCNpilot_expt_300_bf_scaffold_2250_curated_14
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(9699..10907)
DNA (1209bp) protein (403aa)
Serine/threonine phosphatase fused with REC signal receiver domain n=1 Tax=Amycolatopsis orientalis HCCB10007 RepID=R4T923_AMYOR
Magnesium or manganese-dependent protein phosphatase {ECO:0000313|EMBL:ETK31165.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
serine/threonine phosphatase fused with REC signal receiver domain
SCNpilot_expt_300_bf_scaffold_2250_curated_15
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10999..11316)
DNA (318bp) protein (106aa)
Anti-sigma factor antagonist n=1 Tax=Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745) RepID=F2R5Z6_STRVP
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=47853 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV
SCNpilot_expt_300_bf_scaffold_2250_curated_16
Mycobacterium setense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11373..11759)
DNA (387bp) protein (129aa)
Putative cell surface protein n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M4ZUP5_9ACTN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO22935.1}; TaxID=431269 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium setense.;"
Displaying 16 items

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