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SCNpilot_expt_300_bf_scaffold_2025_curated

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_2025_curated_1
Nocardia nova, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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3..716
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Nocardia brasiliensis ATCC 700358 RepID=K0F6L1_9NOCA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHH15016.1}; TaxID=1415166 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia nova SH22a.;"
SCNpilot_expt_300_bf_scaffold_2025_curated_2
uncultured actinobacterium HF4000_04C13, Actinobacteria, Actinobacteria, Bacteria

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713..1264
DNA (552bp) protein (184aa)
Putative uncharacterized protein n=1 Tax=uncultured actinobacterium HF4000_04C13 RepID=E0XVB3_9ACTN
Putative uncharacterized protein {ECO:0000313|EMBL:ADI18354.1}; TaxID=711002 species="Bacteria; Actinobacteria; environmental samples.;" source="uncultured actinobacterium HF4000_04C13.;"
SCNpilot_expt_300_bf_scaffold_2025_curated_3
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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2752..3192
DNA (441bp) protein (147aa)
Integrase catalytic region n=1 Tax=Frankia sp. CN3 RepID=G6HFC8_9ACTO
transposase
Putative transposase {ECO:0000313|EMBL:CAJ61143.1}; TaxID=326424 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
SCNpilot_expt_300_bf_scaffold_2025_curated_4
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

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comp(3301..3714)
DNA (414bp) protein (138aa)
Uncharacterized protein n=2 Tax=Candidatus Microthrix RepID=R4YYJ4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCM63443.1}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_2025_curated_5
Streptomyces sp. F12, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(4449..4889)
DNA (441bp) protein (147aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1436084 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. F12.;"
lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
UPI0003D81822 related cluster n=1 Tax=unknown RepID=UPI0003D81822
SCNpilot_expt_300_bf_scaffold_2025_curated_6
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

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comp(4913..5248)
DNA (336bp) protein (112aa)
Putative transcriptional regulator involved in heavy metal resistance n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z2V7_9ACTN
Putative transcriptional regulator involved in heavy metal resistance {ECO:0000313|EMBL:CCM65063.1}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
putative ArsR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_2025_curated_7
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

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5274..7202
DNA (1929bp) protein (643aa)
Putative Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:CCM65062.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCM65062.1};; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
heavy metal translocating P-type ATPase; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]
Putative Heavy metal translocating P-type ATPase n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z735_9ACTN
SCNpilot_expt_300_bf_scaffold_2025_curated_8
Streptomyces sp. F8, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7515..7910
DNA (396bp) protein (132aa)
UPI0003D86B6B related cluster n=1 Tax=unknown RepID=UPI0003D86B6B
MerR family transcriptional regulator {ECO:0000313|EMBL:AHE39907.1}; TaxID=1436085 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. F8.;"
MerR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_2025_curated_9
unknown

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8652..8867
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2025_curated_10
Tetrasphaera australiensis, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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9282..10475
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SN91_NOCSJ
Uncharacterized protein {ECO:0000313|EMBL:CCH75128.1}; TaxID=1193182 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera australiensis Ben110.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_2025_curated_11
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11490..11969
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI00037E27D3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW12528.1}; TaxID=298653 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
Displaying 11 items

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