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SCNpilot_expt_300_bf_scaffold_1406_curated

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1406_curated_1
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..1006
DNA (1005bp) protein (335aa)
Putative metabolite transporter n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z0A5_9ACTN
Putative metabolite transporter {ECO:0000313|EMBL:CCM64158.1}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
amino acid permease-associated protein
SCNpilot_expt_300_bf_scaffold_1406_curated_2
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1019..1744)
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Candidatus Microthrix parvicella RepID=UPI000382670B
Beta-lactamase domain protein {ECO:0000313|EMBL:CCM62126.1}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
Zn-dependent hydrolase
SCNpilot_expt_300_bf_scaffold_1406_curated_3
Streptomyces bingchenggensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1752..2522)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2N5F1_9ACTO
putative transcriptional regulator, PaaX family protein; K02616 phenylacetic acid degradation operon negative regulatory protein
Putative transcriptional regulator, PaaX family protein {ECO:0000313|EMBL:ADI04862.1}; TaxID=749414 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bingchenggensis (strain BCW-1).;"
SCNpilot_expt_300_bf_scaffold_1406_curated_4
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2549..3520
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4YZ26_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCM63844.1}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1406_curated_5
unknown

Not on your lists

3558..4385
DNA (828bp) protein (276aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1406_curated_6
Streptomyces avermitilis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4334..5299
DNA (966bp) protein (322aa)
Putative membrane protein n=1 Tax=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) RepID=Q82R39_STRAW
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:BAC68014.1}; TaxID=227882 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 /; NCIMB 12804 / NRRL 8165 / MA-4680).;"
SCNpilot_expt_300_bf_scaffold_1406_curated_7
unknown

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comp(5308..5721)
DNA (414bp) protein (138aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1406_curated_8
unknown

Not on your lists

comp(5721..6206)
DNA (486bp) protein (162aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1406_curated_9
Mycobacterium colombiense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6590..6850)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Mycobacterium colombiense CECT 3035 RepID=J4TJ38_9MYCO
Uncharacterized protein {ECO:0000313|EMBL:EJO89588.1}; TaxID=1041522 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium colombiense CECT 3035.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1406_curated_10
marine actinobacterium MedAcidi-G3, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6985..8298)
DNA (1314bp) protein (438aa)
hypothetical protein n=1 Tax=Streptomyces sp. 351MFTsu5.1 RepID=UPI0003666090
UPF0272 protein MB55_05775 {ECO:0000256|HAMAP-Rule:MF_01074}; TaxID=1550402 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G3.;"
hypothetical protein; K09121 hypothetical protein
SCNpilot_expt_300_bf_scaffold_1406_curated_11
unknown

Not on your lists

8574..8882
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1406_curated_12
marine actinobacterium MedAcidi-G3, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9027..10031
DNA (1005bp) protein (335aa)
Prephenate dehydratase {ECO:0000256|RuleBase:RU361254}; Short=PDT {ECO:0000256|RuleBase:RU361254};; EC=4.2.1.51 {ECO:0000256|RuleBase:RU361254};; TaxID=1550402 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G3.;"
pheA; prephenate dehydratase (EC:4.2.1.51)
Prephenate dehydratase n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M4ZV49_9ACTN
SCNpilot_expt_300_bf_scaffold_1406_curated_13
unknown

Not on your lists

10059..10595
DNA (537bp) protein (179aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1406_curated_14
unknown

Not on your lists

10682..11158
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1406_curated_15
unknown

Not on your lists

11155..11631
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1406_curated_16
unknown

Not on your lists

comp(11699..12037)
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1406_curated_17
unknown

Not on your lists

comp(12034..12300)
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1406_curated_18
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(12301..12786)
DNA (486bp) protein (162aa)
Tax=RBG_16_Actinobacteria_68_21_curated
SCNpilot_expt_300_bf_scaffold_1406_curated_19
Cellulomonas bogoriensis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13010..13432)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0H9I5_ACTM4
Uncharacterized protein {ECO:0000313|EMBL:KGM09517.1}; TaxID=1386082 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas bogoriensis 69B4 = DSM 16987.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1406_curated_20
unknown

Not on your lists

comp(13849..14211)
DNA (363bp) protein (121aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1406_curated_21
Rhodococcus triatomae, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14488..15246
DNA (759bp) protein (253aa)
Enoyl-CoA hydratase n=1 Tax=Rhodococcus triatomae BKS 15-14 RepID=M2VHE2_9NOCA
Enoyl-CoA hydratase {ECO:0000313|EMBL:EME22401.1}; TaxID=1278078 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus triatomae BKS 15-14.;"
Enoyl-CoA hydratase
SCNpilot_expt_300_bf_scaffold_1406_curated_22
unknown

Not on your lists

comp(15392..15646)
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1406_curated_23
unknown

Not on your lists

comp(15698..16174)
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1406_curated_24
Rhodococcus triatomae, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17521..19029
DNA (1509bp) protein (503aa)
hypothetical protein n=1 Tax=Nonomuraea coxensis RepID=UPI00035FC388
Uncharacterized protein {ECO:0000313|EMBL:EME21395.1}; TaxID=1278078 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus triatomae BKS 15-14.;"
protein of unknown function DUF1254
SCNpilot_expt_300_bf_scaffold_1406_curated_25
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19042..19761
DNA (720bp) protein (240aa)
Dienelactone hydrolase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q131Z4_RHOPS
dienelactone hydrolase
Dienelactone hydrolase {ECO:0000313|EMBL:ABE41095.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_300_bf_scaffold_1406_curated_26
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19769..20347
DNA (579bp) protein (193aa)
fructose-2,6-bisphosphatase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Fructose-2,6-bisphosphatase n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L553_FRAAD
Fructose-2,6-bisphosphatase {ECO:0000313|EMBL:AFC86632.1}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
SCNpilot_expt_300_bf_scaffold_1406_curated_27
Streptomyces fulvissimus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20352..21779)
DNA (1428bp) protein (476aa)
hypothetical protein n=1 Tax=Streptomyces sp. HmicA12 RepID=UPI000366C6D4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK75752.1}; TaxID=1303692 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fulvissimus DSM 40593.;"
SCNpilot_expt_300_bf_scaffold_1406_curated_28
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21787..22188)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Cellulomonas sp. JC225 RepID=UPI0002EB3238
Putative Integral membrane protein {ECO:0000313|EMBL:CCM64267.1}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
integral membrane protein
SCNpilot_expt_300_bf_scaffold_1406_curated_29
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22394..23020
DNA (627bp) protein (209aa)
Methyltransferase type 12 n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3PUQ3_STANL
type 12 methyltransferase
Methyltransferase type 12 {ECO:0000313|EMBL:ADD44927.1}; TaxID=446470 species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
SCNpilot_expt_300_bf_scaffold_1406_curated_30
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

23140..24018
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A5Q4_9ACTN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN03759.1}; TaxID=1313172 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
Displaying 30 items

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