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SCNpilot_expt_300_bf_scaffold_2001_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_2001_curated_1
unknown

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2..286
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2001_curated_2
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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comp(300..722)
DNA (423bp) protein (141aa)
leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4]
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
Leucine--tRNA ligase n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SAT4_GEOOG
SCNpilot_expt_300_bf_scaffold_2001_curated_3
unknown

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1039..1263
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2001_curated_4
unknown

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1372..1530
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2001_curated_5
unknown

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1609..1827
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2001_curated_6
unknown

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1861..2049
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2001_curated_7
unknown

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2050..2220
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2001_curated_8
RBG_16_Actinobacteria_67_15_curated, Acidimicrobiia, Actinobacteria, Bacteria

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2227..2367
DNA (141bp) protein (47aa)
Tax=RBG_16_Actinobacteria_67_15_curated
SCNpilot_expt_300_bf_scaffold_2001_curated_9
unknown

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2644..2733
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2001_curated_10
unknown

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2851..3000
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2001_curated_11
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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3341..3721
DNA (381bp) protein (127aa)
Putative anti-sigma regulatory factor, serine/threonine protein kinase n=1 Tax=Micromonospora sp. (strain L5) RepID=E8SC32_MICSL
anti-sigma regulatory factor, serine/threonine protein kinase
Putative anti-sigma regulatory factor, serine/threonine protein kinase {ECO:0000313|EMBL:ACY99223.1}; TaxID=471852 species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
SCNpilot_expt_300_bf_scaffold_2001_curated_12
Olsenella uli, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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3718..4494
DNA (777bp) protein (259aa)
RNA polymerase sigma factor n=1 Tax=Olsenella uli (strain ATCC 49627 / DSM 7084 / CIP 109912 / JCM 12494 / VPI D76D-27C) RepID=E1QVT6_OLSUV
RNA polymerase sigma-37 subunit RpsB/SigB; K03090 RNA polymerase sigma-B factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=633147 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella uli (strain ATCC 49627 / DSM 7084 / CIP 109912 / JCM 12494 /; VPI D76D-27C) (Lactobacillus uli).;"
SCNpilot_expt_300_bf_scaffold_2001_curated_13
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(4481..4813)
DNA (333bp) protein (111aa)
Anti-sigma factor antagonist n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AXK9_STRRD
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
anti-sigma F factor antagonist
SCNpilot_expt_300_bf_scaffold_2001_curated_14
unknown

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comp(5226..5564)
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2001_curated_15
unknown

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comp(5720..7066)
DNA (1347bp) protein (449aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_2001_curated_16
Saccharomonospora azurea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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7135..7614
DNA (480bp) protein (160aa)
recQ1; DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
ATP-dependent DNA helicase RecQ n=1 Tax=Saccharomonospora azurea SZMC 14600 RepID=H0K736_9PSEU
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:EHK86605.1}; TaxID=1114959 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora azurea SZMC 14600.;"
SCNpilot_expt_300_bf_scaffold_2001_curated_17
actinobacterium acAcidi, Actinobacteria, Actinobacteria, Bacteria

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comp(7627..8334)
DNA (708bp) protein (236aa)
Putative oxidoreductase n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A1X9_9ACTN
Putative oxidoreductase {ECO:0000313|EMBL:KGA08776.1}; TaxID=1504320 species="Bacteria; Actinobacteria.;" source="actinobacterium acAcidi.;"
putative oxidoreductase
SCNpilot_expt_300_bf_scaffold_2001_curated_18
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8563..9105)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B3EFFA
Uncharacterized protein {ECO:0000313|EMBL:EWT02432.1}; TaxID=1386089 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_2001_curated_19
unknown

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comp(9162..9575)
DNA (414bp) protein (138aa)

This feature has no annotations

Displaying 19 items

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