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SCNpilot_expt_300_bf_scaffold_429_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_429_curated_1
Candidatus Symbiobacter mobilis, Candidatus Symbiobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..172)
DNA (171bp) protein (57aa)
prevent-host-death protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036AB9C4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX88434.1}; TaxID=946483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Candidatus Symbiobacter mobilis CR.;"
SCNpilot_expt_300_bf_scaffold_429_curated_2
Pseudomonas brassicacearum, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(834..1637)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Pseudomonas brassicacearum (strain NFM421) RepID=F2KBV3_PSEBN
prophage
Uncharacterized protein {ECO:0000313|EMBL:AEA66885.1}; TaxID=994484 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas brassicacearum (strain NFM421).;"
SCNpilot_expt_300_bf_scaffold_429_curated_3
Acinetobacter tjernbergiae, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2190..3578)
DNA (1389bp) protein (463aa)
hypothetical protein n=1 Tax=Methylomicrobium buryatense RepID=UPI00036F54F9
Uncharacterized protein {ECO:0000313|EMBL:ESK52895.1}; TaxID=1120928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter tjernbergiae DSM 14971 = CIP 107465.;"
SCNpilot_expt_300_bf_scaffold_429_curated_4
unknown

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comp(3575..4684)
DNA (1110bp) protein (370aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_429_curated_5
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5197..6423)
DNA (1227bp) protein (409aa)
Putative transposase (Mutator type) n=1 Tax=Comamonas testosteroni RepID=D3VWZ7_COMTE
Transposase {ECO:0000313|EMBL:EXU78450.1}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
transposase, mutator type
SCNpilot_expt_300_bf_scaffold_429_curated_6
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6759..8003)
DNA (1245bp) protein (415aa)
integrase n=1 Tax=Comamonas sp. B-9 RepID=UPI0003956C9D
Integrase {ECO:0000313|EMBL:KGG83090.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
integrase family protein
SCNpilot_expt_300_bf_scaffold_429_curated_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8357..10207)
DNA (1851bp) protein (617aa)
Peptidase M14 carboxypeptidase A n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBH2_ALIDK
peptidase M14 carboxypeptidase A
Peptidase M14 carboxypeptidase A {ECO:0000313|EMBL:AEB85817.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_429_curated_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10308..12017)
DNA (1710bp) protein (570aa)
ATP-dependent RNA helicase RhlE {ECO:0000256|HAMAP-Rule:MF_00968}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00968};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
DEAD/DEAH box helicase domain-containing protein; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
ATP-dependent RNA helicase RhlE n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBH1_ALIDK
SCNpilot_expt_300_bf_scaffold_429_curated_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12275..13936
DNA (1662bp) protein (554aa)
ATP-binding cassette protein, ChvD family; K06020 sulfate-transporting ATPase [EC:3.6.3.25]
ATP-binding cassette protein, ChvD family n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBH0_ALIDK
ATP-binding cassette protein, ChvD family {ECO:0000313|EMBL:AEB85815.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_429_curated_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13943..14689)
DNA (747bp) protein (249aa)
TRAP transporter solute receptor TAXI family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBG9_ALIDK
TRAP transporter solute receptor TAXI family protein
TRAP transporter solute receptor TAXI family protein {ECO:0000313|EMBL:AEB85814.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_429_curated_11
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14705..15274)
DNA (570bp) protein (190aa)
TRAP transporter solute receptor TAXI family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBG9_ALIDK
TRAP transporter solute receptor TAXI family protein
Trap transporter solute receptor taxi family protein {ECO:0000313|EMBL:GAO27336.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_429_curated_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15281..16294)
DNA (1014bp) protein (338aa)
Peptidase S58 DmpA n=2 Tax=Alicycliphilus denitrificans RepID=E8TT54_ALIDB
peptidase S58 DmpA
Peptidase S58 DmpA {ECO:0000313|EMBL:AEB85813.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_429_curated_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16333..16812)
DNA (480bp) protein (160aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TT55_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB85812.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_429_curated_14
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16838..17323)
DNA (486bp) protein (162aa)
Blue (Type 1) copper domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TT56_ALIDB
blue (type 1) copper domain protein
Blue copper domain-containing protein {ECO:0000313|EMBL:GAO27339.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_429_curated_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17424..17777)
DNA (354bp) protein (118aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TT57_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU99213.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_429_curated_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17795..18388)
DNA (594bp) protein (198aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TT58_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU99214.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_429_curated_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18569..20581)
DNA (2013bp) protein (671aa)
heavy metal translocating p-type atpase; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]
Heavy metal translocating P-type ATPase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TT59_ALIDB
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:ADU99215.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_429_curated_18
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20622..21080
DNA (459bp) protein (153aa)
Transcription regulator MerR DNA binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TT60_ALIDB
MerR family transcriptional regulator
MerR family transcriptional regulator {ECO:0000313|EMBL:GAO27343.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_429_curated_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21160..21984
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBG1_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB85806.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_429_curated_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22003..22986
DNA (984bp) protein (328aa)
Mammalian cell entry related domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TT62_ALIDB
mammalian cell entry related domain protein
Mammalian cell entry related domain protein {ECO:0000313|EMBL:ADU99218.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_429_curated_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22983..23777
DNA (795bp) protein (265aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TT63_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB85804.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_429_curated_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23759..24592)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBF8_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU99220.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_429_curated_23
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24616..26142)
DNA (1527bp) protein (509aa)
Carbohydrate kinase, YjeF related protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TT65_ALIDB
carbohydrate kinase, yjef related protein
Carbohydrate kinase, YjeF related protein {ECO:0000313|EMBL:ADU99221.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Displaying 23 items

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